Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03857 ATGGCCGATAAAGTCCCACCTAACGCGAATGCTGGATCTCAAGGGTTCAACCCAGGATTAATAGTTCTTCTGGTTGTTGGAGGGTTGCTATTGACATTCCTCATAGGAAATTATGTGCTCTACGCATATGCACAGAAGACCATCCCTCCTAGAAAAAAGAAGCCGGTctccaaaaagaagatgaaaaaggaGAGACTGAAGCAAGGAGTCTCTGCACCTGGAGAGTAG 228 0.4211 MADKVPPNANAGSQGFNPGLIVLLVVGGLLLTFLIGNYVLYAYAQKTIPPRKKKPVSKKKMKKERLKQGVSAPGE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03857 75 PANTHER DNA-BINDING PROTEIN S1FA2 9 75 IPR006779 GO:0003677|GO:0005634|GO:0006355
Tsu07g03857 75 Pfam DNA binding protein S1FA 12 75 IPR006779 GO:0003677|GO:0005634|GO:0006355
Tsu07g03857 75 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 9 75 - -
Tsu07g03857 75 MobiDBLite consensus disorder prediction 50 75 - -
Tsu07g03857 75 MobiDBLite consensus disorder prediction 51 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03857 Tsu-Chr7 44714996 44716969 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Tsu07g03857 S1FA 5.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03857 - - gmx:100500059 114.39