Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03852 ATGGCTAACGACTCCTCGTTTTTGTTCGCTGGCATTCGTTTCGATAGAAAGAAATTCGGCACCGATATTGCCAGATTTCAGaaaaaagataccGACGACAGTTTGGCGAAGATTCAGAGTGTgacagaagatgaagaaaataaGGAAACAATAGAAGCTGTGTCTGGAAAGAAGAGGAAGCGCAAGAAAACCTCTGCCGAAGCGGTTGATGGATTCAGTGTGTTCCGAAGTTCCACATCCAAGTCAAACAAAGAAGTCAAAGTCGATGACGACGACGATGAGTCCATTCGTCTgaagaaagaacaaaataaGCAACTTGAGCGAGATGCTATCTTCAGGAAGAATCATAACATTCATGTCTCTGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGACGAGTTGAATACAAGATATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGACAGGCTATTCCAGTACTCTTACAGGATCGTGAATGTTTTGCCTGTGCCCCAACCGGCTCTGGAAAAACCCTTGCATTTGTCTGTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGCGGCGTTCGAGCTATTATTATTTGTCATAGCCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGGGAAAAGTTCCGTATCAAGTTAATGACAAAAAATCTTTTAAGAAATGctgatttttcaaaattttcttgtGACATACTTATTTCCACGCCACTTCGATTAAGCTTGGCCATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCTGGATTGTTCACGCAGATTGATTCTATTATCAAAGCATGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGTGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAAAATATGGCTTCTGAAACAATTAAGCAAAAGTTGGTTTTTACGGGAAGTGAAGAAGGGAAACTTATAGCTATTCGGCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGATCTTTGTCCAAAGCAAGGAGCGAGCCAAAGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGATGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGACTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGCGAAGCGATTACATTTTACACGGAGGAGGATATTCCATTCTTGCGGAATGTAGCTAATCTGATGGCATCCTCAGGTTGTGAAGTTCCATCCTGGTTGACAGATTTACAGAAAAAGAAGTGGAAGAAGCACCGGCCCATAAGAGATTCTATCTCAACTAAACCTGCAGTCGAAAAGGAAAACTCAACAGAGAAGTTACAGAAAAAGAAGCGGAAGAAGCACCGGCCCATAAGAGATTCTATCTCAACTAAACCTGCAGTCAAAAAGGAAAACTCAACAGAGGAGTTACAGAAAAAGAAGCGGAAGAAGCACCGGCCTGTAGTCAAAAAGGAAAACTCAACAGAACCTGATCTATAA 1767 0.4092 MANDSSFLFAGIRFDRKKFGTDIARFQKKDTDDSLAKIQSVTEDEENKETIEAVSGKKRKRKKTSAEAVDGFSVFRSSTSKSNKEVKVDDDDDESIRLKKEQNKQLERDAIFRKNHNIHVSGYNVPSPLQSFDELNTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGVRAIIICHSRELSGQTYRECKKLAKGEKFRIKLMTKNLLRNADFSKFSCDILISTPLRLSLAIKKKKVDLSRVEYLVLDESDKLFEPGLFTQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLIFVQSKERAKELYGELAFDNIRVDVIHSDLSQDERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANLMASSGCEVPSWLTDLQKKKWKKHRPIRDSISTKPAVEKENSTEKLQKKKRKKHRPIRDSISTKPAVKKENSTEELQKKKRKKHRPVVKKENSTEPDL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03852 588 SMART helicmild6 387 468 IPR001650 -
Tsu07g03852 588 Pfam Helicase conserved C-terminal domain 370 468 IPR001650 -
Tsu07g03852 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 480 IPR027417 -
Tsu07g03852 588 CDD SF2_C_DEAD 347 477 - -
Tsu07g03852 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 507 IPR001650 -
Tsu07g03852 588 CDD DEADc_DDX52 145 338 IPR044764 GO:0003724|GO:0005524|GO:0030490
Tsu07g03852 588 MobiDBLite consensus disorder prediction 513 588 - -
Tsu07g03852 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 525 - -
Tsu07g03852 588 Gene3D - 109 342 IPR027417 -
Tsu07g03852 588 MobiDBLite consensus disorder prediction 39 67 - -
Tsu07g03852 588 MobiDBLite consensus disorder prediction 518 535 - -
Tsu07g03852 588 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 525 - -
Tsu07g03852 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
Tsu07g03852 588 MobiDBLite consensus disorder prediction 549 567 - -
Tsu07g03852 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Tsu07g03852 588 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Tsu07g03852 588 Gene3D - 343 585 IPR027417 -
Tsu07g03852 588 SMART ultradead3 153 350 IPR014001 -
Tsu07g03852 588 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03852 Tsu-Chr7 44683191 44689729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03852 128 506 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 5.75e-54 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03852 07 44683191 44689729 Tsu07g03852 07 44683191 44689729 ECH