Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03846 ATGGGGAAGACACGAGGAATGGGAGCGGCTCGCAAGATGAGGAGACAACGTATTAAGCAAAGGTGGGCTGATaagcaatataaaaaatctcATTTGGGGAAAGAATGGAACAAGCCTTTTGCTGGATCATCTCATGCTAAGGGAATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCCATTCGAAAATGTGCCCGAGTTCAACTCATTAAAAATGGGAAGAAGATAGCTGCCTTTGTGCCAAATGATGGTTGCTTGAATTACATTGAAGAGAATGATGAAGTTTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTTGGTGATATTCCCGGTGTTAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTCTTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAA 429 0.4196 MGKTRGMGAARKMRRQRIKQRWADKQYKKSHLGKEWNKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03846 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 15 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tsu07g03846 142 Pfam Ribosomal protein S12/S23 34 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tsu07g03846 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tsu07g03846 142 Gene3D - 25 142 IPR012340 -
Tsu07g03846 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tsu07g03846 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Tsu07g03846 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Tsu07g03846 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Tsu07g03846 142 MobiDBLite consensus disorder prediction 8 22 - -
Tsu07g03846 142 MobiDBLite consensus disorder prediction 1 39 - -
Tsu07g03846 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03846 Tsu-Chr7 44644455 44645597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03846 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 4.47e-97 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03846 K02973 - ath:AT5G02960 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03846 07 44644455 44645597 Tsu01g02480 01 27039410 27041196 ECH
Tsu07g03846 07 44644455 44645597 Tsu07g03846 07 44644455 44645597 ECH
Tsu07g03846 07 44644455 44645597 Tsu01g02480 01 27039410 27041196 PCT