Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03840 ATGTTGGATCTCAATCTCAACGCTCATTCCTCTTTCGATAACTACACTTTCCCACTCTCCGTCACCGCTCAAATGGAAAGCTCCGGTAGCTTTGATTCCTCCGTCGTCAACACCGCCGACACTGAAGATTCATCCTCTTACGGCGATGCCTACGGTTACAACTTCGCCATACtcaacaacaacagtaacaaCAACAGTACAATCTCCGGTGAGCTTCAACACTCCGGCGCCGGTGAATCTGGTGTACGGACAATTCAGCTTTTTCCTTCTAACGAATCAGGATTAATCTCACCGTCTGAAAATAGAGGATGGATGAATTTTCCGTCGGATCATCACGGCGGTGTACCGGAGCATACTGTTGTTGTTGCTCCACGACCACAGCAAGTGAAGAAGAGTCGCCGTGGACCGAGGTCACGAAGCTCGCAGTATCGTGGCGTTACTTTCTACCGGAGAACAGGACGATGGGAATCGCATATTTGgGATTGTGGAAAACAAGTGTACTTAGGTGGATTTGATACTGCACATGCTGCAGCAAGAGCTTATGATCGAGCTGCGATCAAGTTTCGTGGAGTTGATGCTGATATAAATTTCAATGTTAGTGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGGAGACAGAGTACTGGTTTCTCAAGGGGAAGCTCTAAATACAGGGGAGTTACTCTGCATAAATGTGGTAGATGGGAAGCTCGTATGGGACAGTTTCTAGGGAAGAAGTATATATATCTTGGGCTTTTCGATAGCGAGCTAGACGCTGCAAgAGCTTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTGACAAATTTTGAGGCTAGTACTTATGAAGGAGAGTTAATTTCCCACTGTGATAATGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGCTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCAACACAACGGAAGTGGTTTACAAGTTCAGCGGAGCTGGGATGATATGCCTCTTGATAAGAGTGTTATGTTTGAGGACTCTGGGTCAAGATCAGTCAATGTTCAGTCAACTTATGGTTTTTCCATAGCATCTGAGAATCAACCTCCAGTTTGGAGTGGTAACAATTACTTCCCCTTGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTTCTCCAGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACTGCAACAATACCATCAGCTGCGGATAGTCAAATTCATTTTGCAAACATGAATTTCCATGGCCACCCTCATTTTCCTCCTCAGATGACTAACTCCAGCACCATACCCCCTTTCTACTGCAGAAGCTGA 1440 0.4354 MLDLNLNAHSSFDNYTFPLSVTAQMESSGSFDSSVVNTADTEDSSSYGDAYGYNFAILNNNSNNNSTISGELQHSGAGESGVRTIQLFPSNESGLISPSENRGWMNFPSDHHGGVPEHTVVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASTYEGELISHCDNEDSKQNLDLNLAIAPPSNSDVQMMNMQHNGSGLQVQRSWDDMPLDKSVMFEDSGSRSVNVQSTYGFSIASENQPPVWSGNNYFPLCKERAIENRMESSPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTATIPSAADSQIHFANMNFHGHPHFPPQMTNSSTIPPFYCRS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03840 479 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 Pfam AP2 domain 233 283 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Tsu07g03840 479 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Tsu07g03840 479 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 469 - -
Tsu07g03840 479 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 SUPERFAMILY DNA-binding domain 141 200 IPR016177 GO:0003677
Tsu07g03840 479 SUPERFAMILY DNA-binding domain 233 292 IPR016177 GO:0003677
Tsu07g03840 479 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Tsu07g03840 479 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03840 Tsu-Chr7 44592251 44595061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03840 120 332 AP2-EREBP Transcription Factor Family AT4G36920 75.234 2.45e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu07g03840 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03840 K09284 - gmx:100797238 642.884