Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03807 atGGCAATGAAGAGACAAAGGAGCAATGAAGAAAGCATAGATTTAGTAAATTGTCTAATGCTACTTTCTTGTCCACAACAAAAAACCATTGAAAATGGTGAATATGAATGCAAAACATGCAACAAAAAATTCTCATCTTTTCAAGCTCTTGGTGGTCATAGAGCTAGTCACAAGAGAGTTAAATTATCTGAAGGTGAAGAACTTAAAGAACAAGCAAAATCTCTTAGTTTGTGGAACAAACCTAAAATGCATGAGTGTTCTATTTGTGGTATGGGATTTTCTTTGGGTCAAGCATTAGGAGGACACATGAGAAAACATAGAGCTCTTATTAATGAAGGGGTTTCTTCTATGAATGAAATTATTGCAAAAATTCCAATTTTGAAGAGATCAAATAGTAAGAGAGTTATGGGATTGGACTTGAATTTGACACCTTTAGAGAATGATGACTTGGTGATGTTTGGAATGAAGTCACCACTAACACCAATTCCTCTTTCTTTGTTCTGA 504 0.3433 MAMKRQRSNEESIDLVNCLMLLSCPQQKTIENGEYECKTCNKKFSSFQALGGHRASHKRVKLSEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRALINEGVSSMNEIIAKIPILKRSNSKRVMGLDLNLTPLENDDLVMFGMKSPLTPIPLSLF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03807 167 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Tsu07g03807 167 Pfam C2H2-type zinc finger 35 59 - -
Tsu07g03807 167 Pfam C2H2-type zinc finger 84 108 - -
Tsu07g03807 167 PANTHER ZINC FINGER PROTEIN ZAT5 3 158 - -
Tsu07g03807 167 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 158 - -
Tsu07g03807 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Tsu07g03807 167 Gene3D Classic Zinc Finger 32 106 - -
Tsu07g03807 167 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Tsu07g03807 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Tsu07g03807 167 SMART c2h2final6 35 57 IPR013087 -
Tsu07g03807 167 SMART c2h2final6 84 106 IPR013087 -
Tsu07g03807 167 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03807 Tsu-Chr7 44350714 44351523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03807 3 154 C2H2 Transcription Factor Family AT2G37430 47.024 5.38e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03807 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03807 - - aprc:113870747 223.016