Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03806 ATGAAGAGACAAAGAGATATAGAAGGATTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGCTCTCTTATCCCCAACATCAACAAAACAATAAGCCAAATCAAAAAAGTTTTGGGCAAGTGGAATATGAGTGCAAAACATGCAACAAAAAATTCTCATCATTTCAAGCACTTGGTGGCCATAGGGCTAGTCATAAAAGATCAAAATTTGAAGGGGATGAACTCATCAAAGCAAATGCATTGACCTTGGGAAGTAAACCCAAAATGCATGAATGTTCAATTTGTGGTCAAGAATTTTCTTTGGGACAAGCATTAGGTGGACACATGAGAAGACATAAAGCTATCATCAATGAAGAGGTTGTTTCTTCAATGGAAAAAGTTGTGAAGTTACCAATTTTAAAGAGATTAAATAGTGCAAGGATTATTTGCCTGGACTTGAACTTGACACCATTAGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTTTGA 513 0.3489 MKRQRDIEGLESIDLANCLMMLSYPQHQQNNKPNQKSFGQVEYECKTCNKKFSSFQALGGHRASHKRSKFEGDELIKANALTLGSKPKMHECSICGQEFSLGQALGGHMRRHKAIINEEVVSSMEKVVKLPILKRLNSARIICLDLNLTPLENDLKLLFGKMAPNLDVLV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03806 170 SUPERFAMILY beta-beta-alpha zinc fingers 43 112 IPR036236 -
Tsu07g03806 170 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 166 - -
Tsu07g03806 170 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tsu07g03806 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Tsu07g03806 170 PANTHER ZINC FINGER PROTEIN ZAT5 12 166 - -
Tsu07g03806 170 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Tsu07g03806 170 Gene3D Classic Zinc Finger 73 130 - -
Tsu07g03806 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Tsu07g03806 170 Pfam C2H2-type zinc finger 90 114 - -
Tsu07g03806 170 Pfam C2H2-type zinc finger 43 67 - -
Tsu07g03806 170 Gene3D Classic Zinc Finger 42 68 - -
Tsu07g03806 170 SMART c2h2final6 90 112 IPR013087 -
Tsu07g03806 170 SMART c2h2final6 43 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03806 Tsu-Chr7 44343847 44344385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03806 1 168 C2H2 Transcription Factor Family AT2G37430 45.856 1.83e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03806 zf-C2H2_6 1.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03806 - - gmx:100527151 235.728