Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03801 ATGGCATTTTTCTCTGGATTTCAACGCTTACTTCGTCACTCTCAATCTCCACTTGTTAGCTCTCACTTCAATTCGATACGTCTCAATTCAACTCTCACTTCTCCCAAACTTTTTGTCAGTGGTCTTTCGAGACAGACAACAGATGAAAAACTTACGGAAGCATTTTCACCTTTTGGGCAGCTGGTCGAAGCTAAGGTGATAATGGACAGACCCTCTGGAAGATCAAAGGGATTTGCTTTTGTAACGTATGCAACCGTAGAAGAAGCTGAGAAGGCAAGAGAAGGAATGAATGCAAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCGAAACCGAGAGAACCCAGACCTCCTCAGCAATCAGAATCTCAGCCGTCTCAATCCGGTTTCACAGTTAATAAGACCGTTGGGTGGTGTGGTTGA 426 0.4343 MAFFSGFQRLLRHSQSPLVSSHFNSIRLNSTLTSPKLFVSGLSRQTTDEKLTEAFSPFGQLVEAKVIMDRPSGRSKGFAFVTYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSESQPSQSGFTVNKTVGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03801 141 MobiDBLite consensus disorder prediction 121 135 - -
Tsu07g03801 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Tsu07g03801 141 MobiDBLite consensus disorder prediction 111 141 - -
Tsu07g03801 141 Gene3D - 24 135 IPR012677 -
Tsu07g03801 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Tsu07g03801 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 141 - -
Tsu07g03801 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Tsu07g03801 141 PANTHER NUCLEOLAR PROTEIN 8 1 141 - -
Tsu07g03801 141 SUPERFAMILY RNA-binding domain, RBD 34 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03801 Tsu-Chr7 44287369 44289809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03801 37 128 Eukaryotic Initiation Factors Gene Family AT3G16380 38.947 5.69e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03801 - - gmx:100306326 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03801 07 44287369 44289809 Tsu07g03801 07 44287369 44289809 ECH