Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03800 ATGACGTCATTTTTGAAGCCTGAGAATGCCCTTAAAAGGGCAGAAGAGTTAATCAATGTCGGGCAGAAGCAGGATGCTCTTCAGACTCTGCATGATCTTATTACTTCAAAAAGATACAGAGCATGGCAGAAAACACTTGAAAGGATCATGTTTAAGTATGTAGAGCTGTGTGTAGACATGAGGAAAGGACGGTTTGCTAAGGATGGGCTCATTCAATATCGAATCATTTGTCAGCAAGTTAATGTTAGTTCACTTGAGGAGGTGATTAAGCATTTCATGCACCTGTCAACAGAGAAAGCTGAACAAGCTCGTAGCCAGGCTCAGGAATTAGAAGAAGCCCTTGATGTTGATGACTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGCTGAGCTATGTCAGTGGTGAGAAAGGAAAGGATAGATCTGATCGGGAGCTTGTTACTCCATGGTTTAAATTTCTATGGGAAACTTACAGAACAGTGCTCGAGATATTGCGGAACAACTCAAAATTGGAAGCCCTATATGCTATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAACGAACAACGGAGTTTCGAAGACTTTGCGAAATCATTAGAAACCATTTGGCTAATCTTAACAAATATCGGGACCAACGTGACCGACCTGATCTTTCTGCTCCTGAAAGCTTGCAATTGTATCTTGATACAAGATTTGAACAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCATTTAGATCTGTTGAAGATATACATGGGTTGATGTGCATGGTCAAGAAAACTCCGAAACCATCATTGATGACGGTTTACTATGTTAAATTGACTGAAATATTTTGGATATCTTCAAGTCATTTATATCATGCATATGCATGGTTCAAGCtctttttgttacaaaaaagtTTCAACAAAAATCTGAGTCAGAAGGATCTCCAGTTGATAGCTTCATCTGTTGTTTTAGCTGCACTTTCAGTGCCTCCTCATGATCGCACTCACGGTGCATCTCATTTAGAACTAGAGCATGAAAAGGAGCGAAATCTGAGGATGGCTAATCTTATAGGCTTTAATCTTGAAACTAAGCCTGATAGCAGAGAAATGCTCTCAAGATCATCGCTTCTCGCTGAACTGGCATCAAAGGGTGTGATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTTTTGGAACATGAATTTCTACCCTCCGATCTTGCACTGAAAGTACAACCCTTgctaaataaaatttcaaaattaggGGGTAAGTTTACTTTTGCTTCATCAGTTCCAGAGGTCCAATTTTCGCAGTATGTCCCAGCACTTGAAAAGTTAGCTACCTTGAGGTTACTACAACAGGTGTCTAATGTGTACCAAACAATGAAGATTGATAACCTTGCTGGGTTGATCcctttctttgatttttctgtCGTGGAAAAGATTTCCGTGGATGCTGTTAAGCAGAAATTTCTATCAATGAAAGTTGACCACATGAAAAATGTTGTTATTTTCTGTAAGACGAGTCTTGAGGCTGATGGCTTGAAGGATCACTTGGCTAGTTTTGCTGAACAATTGAACAAGGCAAGGCAGATGATTTGTCCTCCTGATAGGAAACAATCAAAACTTGGAGCCTTGCTCCCGACCTTGTCTGAGGTTGTGGCCAAAGAACACAAGAGGCTCCTTGCTCGGAAATCAATTATTGAAAAGAGGAAAGAGGAACAAGAACGACAGCTTCTTGAAATGGAACGTGAGGAGGAGAACAAGAAGTTAAGACTACAGAAAGTTAATGATGAAGCAGAGAAAATTCGAATTGCAGCCGAGTCTGATGCTAGGCGACTTAAAAGGATCCAAAAGGAAatggaggaaaaggaaaaagaagaagctCAGCATTTACTTGAAGAAGCTAAAAGGATTATTGCAGGAAAGGGTAAAAAGCACCCCCCCATAGAGACTGCGAACCTTTCTAGGCAAGCCTTGTTACAGTTGACTTTGATGCAACAACAAAAGGAGAGACAAGACATGGAGAAGAAACTGCAGAAATTAGCTAAAACCATGGATCATTTGGAAAGAGCAAAGAGAGAAGAAGCTGCTCCCCTTATTGAAGCGGCATATCAACAGCGCCTTGTGGAAGAGAGGATTCTTCATGAGCGTGAGCAACAATTGGAGGTTGAACTGAGCAAACAACGTCATGCTGGTGATCTCAATGAAAAGGAGAGGCTTAGTCGAATGATTGGAAATAAAGAGATATATCAAGAGAAAGTTGTCAGTCATCGCCAAGCAGAAATTAATAGGCTTAATAGAGAAAGAGAGGAACGCATCACTAGGATTTTACAATCCAGAAAACAGGAGAGGGAAAAGATGAGGAAGTTGAAGTATTTTCTTCAGGTTGAAGAAGAGAGACGGCAAAAATTGCGTGAGGCAGAAGAAGCTCAGAAGCGCGAAGAGgcagagagaaaaaagaaggaaCAGCTTGAACGCCAAGCAAAATTGGATGAGATAGCTGAAAAGCAGAGGCAAAGGGAAAGAGAAATTGAAGAGAAGGCTGAGAGGGAAAAGAGGGAAGCATTGTTGGGCAGACCTACTGAACCAGCTCTGAGGCCTTATGAGCCTCCTGCCCGTCAATTGGAGTCTGGTGCTGCTCCCGCTGCTGCAGCTGCTGCAACCTCAGGTGCAGGGAAATATGTTCCCAAGTTCCGGCGAGGAGGTGCTGATGCCACAAGAGCTCCTCCTCCTGAAGCAGATCGTTGGGGCAACAGTAGCAGCAAGCCAGATGGTGACAGGTGGGACCGCAACACCTCATTTGGTTCTGGCGGGGGTTCAAGGTCATCTTCAACTTGGTCATCTTCCAGGGTTTCACGTGATCGTCAGTGA 2883 0.4145 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQELEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWISSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPDSREMLSRSSLLAELASKGVMSCVSQEVKDIYYLLEHEFLPSDLALKVQPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQTMKIDNLAGLIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLKDHLASFAEQLNKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEENKKLRLQKVNDEAEKIRIAAESDARRLKRIQKEMEEKEKEEAQHLLEEAKRIIAGKGKKHPPIETANLSRQALLQLTLMQQQKERQDMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERILHEREQQLEVELSKQRHAGDLNEKERLSRMIGNKEIYQEKVVSHRQAEINRLNREREERITRILQSRKQEREKMRKLKYFLQVEEERRQKLREAEEAQKREEAERKKKEQLERQAKLDEIAEKQRQREREIEEKAEREKREALLGRPTEPALRPYEPPARQLESGAAPAAAAAATSGAGKYVPKFRRGGADATRAPPPEADRWGNSSSKPDGDRWDRNTSFGSGGGSRSSSTWSSSRVSRDRQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03800 960 Gene3D - 269 342 - -
Tsu07g03800 960 Gene3D - 352 509 - -
Tsu07g03800 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 907 IPR027512 GO:0005852
Tsu07g03800 960 MobiDBLite consensus disorder prediction 807 960 - -
Tsu07g03800 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 907 - -
Tsu07g03800 960 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 934 IPR027512 GO:0005852
Tsu07g03800 960 Pfam PCI domain 373 508 IPR000717 -
Tsu07g03800 960 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Tsu07g03800 960 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Tsu07g03800 960 MobiDBLite consensus disorder prediction 807 863 - -
Tsu07g03800 960 Coils Coil 561 642 - -
Tsu07g03800 960 SMART PINT_4 441 532 IPR000717 -
Tsu07g03800 960 MobiDBLite consensus disorder prediction 937 954 - -
Tsu07g03800 960 Coils Coil 797 858 - -
Tsu07g03800 960 Gene3D UVR domain 217 268 - -
Tsu07g03800 960 Coils Coil 661 698 - -
Tsu07g03800 960 Coils Coil 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03800 Tsu-Chr7 44276845 44284546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03800 1 960 Eukaryotic Initiation Factors Gene Family AT4G11420 69.908 0.0 1264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03800 K03254 - gmx:100803796 1390.94