Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03776 ATGAACCACTGCGTTCCAGATTTCACTTCTCAAATGGATCAACAACTCTTACCTCGCCCTAAGAAACCCTTCATTGCGGACGATGAGATTATGGAGCTGTTATGGCAAAACGGTCAAGTTGTAACGCAGAGTCAAAACAATCGTCATGTAAAGAAACCACCGTTAGGGAGAAACTCTGAAGATTCAACTCGCGGTGGAACTTCATCTGAAGTAGAAAATAACAATCAATACCTCTTCATGCAAGAAGGTGAAATGGCTTCGTGGCTTCATTATCCAATCaacaatgataatgatgattcTCCCTTCTCCGGCGATTTCCTTAACAGTAGCATGCAAAATCCTCACCGGACTTCTCAATTAACTGAACTCCGGCGGAATCCGATGTCGGCGGTTCCTTCTCGTCTTCCGAATCCGCTGCAACGGAGATCCGAGCAAGTGCAACCGAATTTCGCGTACTTTGCTAGACACGGTGTTAGAGCAGAGGCAGGACCTTCGTCGATTTTGAGAAATTCTGCGAGGGAATCGACGGTGGTTGATTCGTGTGATACGCCTGTTCCGGCGGTGGGTTCGGAGACTGTAAGAAGCTTAGCGGATCCAACGGAAGGAGAAACTGGAGTGTCGGCGCCATCGACGATGTTTGATGAACCGGGCGGTTCGAGTAGTAGTGGCGAACCGGTTCGGATGGTAGGGGAGCAGGATCGGAAGAGGAAGGGACGAGAAGCGGAGGAATGGGAATATCAGAGCGAGGATATTGATTTTGAGTCTGCCGAAGCCAAAAAGAATGTCAGTGGATCATCTACAAAGAGATCCCGTGCTGCCGAGGTCCATAATCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGCTGGATGAAGCAATTGACTACTTGAAGTCACTTCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCGATGATGTTTCCGGGAATCCAGCAGTATATGCCAACAATGGGGATGGGGATGGGAATGGGGATGAGTATGGAAATGGGAATAAACAGACCAGTAATGCCATTTCCAAATATGTTATCTGGTTCTACTTTGCCTGCAGCTGCAAATTTGGGACCAAGATTCGCGGCCATGCCCCCTTTTCACATGCCACATGTTCCTACGCCTGATTCATCGAGAATGCAAGCAACAAATCAAGCAGATAATAATATGTTCATCTCAGTTGGAACACATGATTCAAATCAGTCACGTATTCCAAACTTCACCGATCCTTATCAACAATACCTTGGACCCCACCAGATGCAGTTTCAATCAATGCAGGTATTTTGTCCTCTAATGTTATTTATGATTAggaatttttaa 1401 0.454 MNHCVPDFTSQMDQQLLPRPKKPFIADDEIMELLWQNGQVVTQSQNNRHVKKPPLGRNSEDSTRGGTSSEVENNNQYLFMQEGEMASWLHYPINNDNDDSPFSGDFLNSSMQNPHRTSQLTELRRNPMSAVPSRLPNPLQRRSEQVQPNFAYFARHGVRAEAGPSSILRNSARESTVVDSCDTPVPAVGSETVRSLADPTEGETGVSAPSTMFDEPGGSSSSGEPVRMVGEQDRKRKGREAEEWEYQSEDIDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTMGMGMGMGMSMEMGINRPVMPFPNMLSGSTLPAAANLGPRFAAMPPFHMPHVPTPDSSRMQATNQADNNMFISVGTHDSNQSRIPNFTDPYQQYLGPHQMQFQSMQVFCPLMLFMIRNF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03776 466 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 453 - -
Tsu07g03776 466 MobiDBLite consensus disorder prediction 43 73 - -
Tsu07g03776 466 MobiDBLite consensus disorder prediction 255 279 - -
Tsu07g03776 466 Pfam Helix-loop-helix DNA-binding domain 275 321 IPR011598 GO:0046983
Tsu07g03776 466 MobiDBLite consensus disorder prediction 228 243 - -
Tsu07g03776 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 337 IPR036638 GO:0046983
Tsu07g03776 466 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 453 IPR031066 -
Tsu07g03776 466 MobiDBLite consensus disorder prediction 178 243 - -
Tsu07g03776 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Tsu07g03776 466 Coils Coil 277 297 - -
Tsu07g03776 466 SMART finulus 277 326 IPR011598 GO:0046983
Tsu07g03776 466 CDD bHLH_AtPIF_like 271 334 - -
Tsu07g03776 466 Gene3D - 266 329 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03776 Tsu-Chr7 44026303 44029583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03776 1 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.622 1.86e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g03776 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03776 - - gmx:100797225 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03776 07 44026303 44029583 Tsu07g03776 07 44026303 44029583 ECH
Tsu07g03776 07 44026303 44029583 Tsu01g02565 01 28433664 28442076 PCT