Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03729 ATGGCACCCAATCCGAAAGTTGTAGCGGCTTTCCGTGCAATGGCGAGCCTTGGGATTGAGGAACACAAGGTGAAACCGGTATTGAAGAAACTACTTAGGTTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGACTCTTATTGATGCAATATTTGATGCGGATGAAAACCAGGAGTTAGAGCCGGAGCCGGATCCggcaaagaaaaacaaaaagGCTGTGGAGGTAGATGATGAAGCTCCTGCGCACGAAGAGCCAGTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGTCAAGACGGTCAATCATCACGCCTGCTGTCTAACGGTGGTCCAATTTCAGCTGCCTTTCCATTGAAATCACCTAAACCAGAACCTGGCACAGTACCTGGAAGTAGTTCCAGACTGCAGCCTCAAAGCACATCAGTGTTATCCAATGGAAATGCCGTTGttgacaagggaaagaaacctCTATCACCTGAAGATACTCTAAGAGGGAGAATATCTATATCTGACAGAAATCCACCTCCAGCGGTGTTTAAAGAACCAGCTGTTGAACCAGGAACCTCTCCGTTGTCAAATAATAAAACGCCTCATCCTTACCCTTTTATCATCCCCAAGCCCGAGCCTGTTGATGAAGGTCCAGATTATGTGGTTCCTATTTCAATGATTCTTCCTGAACCATCAAGTGTTAGAGACTCTTCGGCAAAGAATGATACAGCTGGAGAGCAAGATGGCAACAACACCGTGGCATCACAGTGCAGAAATGAAAATGTTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGCGAAGTCTAATGCTGAGCTAGCCTCATCATCTACGGGAGAGGACGCATCTGTAAAGGTAATACCAACTGTTTGCCTTTCAAAAGAACCTGAGGCAAATGGCACACTGATTGACGGAGGAAATAAAGATTCCGCGATACTTTCTTGCACTGCAAATGGATCAATCTCTGTTAAGTCTTCTCCTGCCTTGATTGCACCCCAAGCTGCTGTTTCTCCACCCTGCCCAAGTGGTCCGGATGATGCTGTACTAGTTTCCAAGAAGGATGTAATGAATGATTTCTCGGAAAGTGATGGTGGGAAGGAGCCAGAGGAACCTGTGCCTCAAAATCCATGTAATGTAATGAATGCTCCAAAGCATCATCATACAATTGATGATACAAGGGCTGTTGGTGCTACCAATGACCTAACAAAGGGagaagaaaaagtgaaaatttcATGGGTGAATAATTCTAACAATGACATTCCACCTCCGTTTCACTACATACCCCGAAACTTGGTTTTTCGAGATGCGTATGTTAATATTTCTTTATCTCGTATTGGGAGTGAAGATTGTTGTTCTACCTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAAGAAAACTGGAGGGGATTTTGCCTACACTGCACAAGGTGTACTAAAGGAAAAGTTTCTGGAAGAGTGTATTGCCATCAGCCGTGATCCTCAAAATTATTCCTATTGCAAAGAATGCCCACTTGAAATGTCAAAGAATGATGGCTGTTTAGAACCGTGTAAAGGGCATTTAAAGAGGAAATTTATCAAAGAGTGCTGGAGCAAATGTGGCTGCGGGAAACATTGTGGCAATCGGATTGTCCAGCGTGGAATATCTCGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGATGGGGTCTTCGTACCTTGGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTTTGACCGTCGAAGAATTGCATGAGAGGAACTTGAAATATCCCAAAAGTGGGAAATATACGTACCCAATTTTATTGGATGCAGAATGGAACTCAGGAGTTGTAAAAGATAACCATGCTCTTTGCTTATATGCAGCATCATATGGAAATGCTGCAAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAAGGTCCATCTCATCACTATTATCATTTTGCTTTCTTCACCTCCAGAAATATCGCAGCACATGAAGAGTTGACCTGGGACTATGGCATCGACTTTGATGACGATGATCAGCCTGTCGAGCTGTTCCGGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGAACCATTAGATCCTGA 2187 0.422 MAPNPKVVAAFRAMASLGIEEHKVKPVLKKLLRLYDKNWELIEEENYRTLIDAIFDADENQELEPEPDPAKKNKKAVEVDDEAPAHEEPVRPLKRLRLRGQDGQSSRLLSNGGPISAAFPLKSPKPEPGTVPGSSSRLQPQSTSVLSNGNAVVDKGKKPLSPEDTLRGRISISDRNPPPAVFKEPAVEPGTSPLSNNKTPHPYPFIIPKPEPVDEGPDYVVPISMILPEPSSVRDSSAKNDTAGEQDGNNTVASQCRNENVEGEDILPSSNEEAKSNAELASSSTGEDASVKVIPTVCLSKEPEANGTLIDGGNKDSAILSCTANGSISVKSSPALIAPQAAVSPPCPSGPDDAVLVSKKDVMNDFSESDGGKEPEEPVPQNPCNVMNAPKHHHTIDDTRAVGATNDLTKGEEKVKISWVNNSNNDIPPPFHYIPRNLVFRDAYVNISLSRIGSEDCCSTCMGNCVLSSKPCSCAKKTGGDFAYTAQGVLKEKFLEECIAISRDPQNYSYCKECPLEMSKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGISRNLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKSGKYTYPILLDAEWNSGVVKDNHALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSRNIAAHEELTWDYGIDFDDDDQPVELFRCKCGSKFCRNMKRSNRTIRS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03729 728 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Tsu07g03729 728 Gene3D - 1 60 IPR043017 -
Tsu07g03729 728 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 728 IPR025776 -
Tsu07g03729 728 ProSiteProfiles SET domain profile. 561 694 IPR001214 GO:0005515
Tsu07g03729 728 MobiDBLite consensus disorder prediction 230 258 - -
Tsu07g03729 728 MobiDBLite consensus disorder prediction 62 210 - -
Tsu07g03729 728 Pfam Pre-SET motif 409 553 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g03729 728 Gene3D SET domain 408 719 IPR046341 -
Tsu07g03729 728 ProSiteProfiles Pre-SET domain profile. 457 558 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g03729 728 MobiDBLite consensus disorder prediction 64 101 - -
Tsu07g03729 728 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 728 - -
Tsu07g03729 728 CDD SET_SETDB-like 429 694 - -
Tsu07g03729 728 MobiDBLite consensus disorder prediction 270 290 - -
Tsu07g03729 728 SUPERFAMILY SET domain 415 717 IPR046341 -
Tsu07g03729 728 MobiDBLite consensus disorder prediction 228 291 - -
Tsu07g03729 728 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 728 - -
Tsu07g03729 728 Pfam SET domain 573 694 IPR001214 GO:0005515
Tsu07g03729 728 SMART preset_2 405 545 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g03729 728 SMART set_7 561 700 IPR001214 GO:0005515
Tsu07g03729 728 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03729 Tsu-Chr7 43503103 43511113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03729 407 717 Su(var)3-9 homologs AT1G73100 30.183 1.54e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu07g03729 Pre-SET 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03729 - - cam:101500192 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03729 07 43503103 43511113 Tsu07g03729 07 43503103 43511113 ECH
Tsu01g02624 01 29380019 29385994 Tsu07g03729 07 43503103 43511113 PCT