Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03718 atggAAGATTCTGGAAAATCCAATATCAACAGTAGTAGTAAATTATTGAATTCATGGATGCTTCACTTTCAGAAACTCGCTCTCGAACTCAAATGCTCTCTCTGCTTGAACTTGTTCAAACAACCGGTTTTGCTTCCATGCAATCACTTGTTCTGCAGTTCCTGCTTGGTGGATACTGCTGAGATTGGTATTTGTTCTGAGTGCGCTCTCTGCAAGACCAAGTACACTCAAACggATGTAAGGCATTTGTCTTTAGTGGAAAACATTGTCGCGATTTATAAGAATTTGGATGCAACTTTTTGTGCTAACGCGTTTCAGCAACGATCATCTGATAACATGAGGGTTTTGAAGCAGTGCCAAACTCTTCGCAATTCAACAGGTAGTAATAAAAAGGCTGATAAGATTCTGCAGAATTCAAATGGAGTTGAGGTTGGCCAGAATCACAAATCCGGAATTACAATGAATGGTAAAGCCAGGGAGCTTGAAATGTCTCACAGAGGAGGGGATAACAACCACATTGCAGTGAAGCCTAATTCAACGAGATGTTCGCAGACGGAAATTGGGGGTCATATGGAAATGGATTTGAATCAAGTGACACAATCAGCACCAGATAGCCCTCCATTTTGTGACACCAAAGGTTCTGATAATGGTTGCAGCGATCAAAACAGTGAGAAGACGCACAATCTTGAGAGATCTGAAAATTCGTCATTGAAAAGAGCAAGCACAGGAAAAGGTAATATGAAAGAAAGAATGGCTCAGTTCAGGTCCGAAAGTTCTGCCTCTGAAAATGAGGATCTTATGAGAGATCTTAAGAGACAAAAGAATCTTACTAATGGAGATGGCATTATTCAACAAAGCACCTCATATCATAATAAGTTCGTGGATTCTCCCTGTGACTCGGGCACTAATTTTGAAAAGGACCTTGGTGCACTCATCCCTTCAAATGCACCAAATGACTTGTGTCCAAATACTAGCATCTGCTTGTTTTGCCAGTCCTCTAAAGTTTCAGAGGCTACTGGGCCAATGCTGCATTACGCAAATGGGATTTCAGTTACAGGAGATGCTGCAATGCAACCAAATGTCCTGCACGTACATAAAGTTTGTATCGACTGGGCACCACAAGTGTATTTTGTTGGTGATACTGTTAAGAATTTGAAGGCAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCAAATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGTAGAAGAACTTATCATGTCCCTTGTGCAATGGACATCTCTACTTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCTGTTCATTCAAATGTCAAATTCCCAAGTGAGAAATCCAGTCATAATAAACAGGCAATTCAGAACCATCCTGTTTCATCGCAGCTGCCATTTCAACAGTCAAATCAACTGTTGGGAGCTTCACAGGATTATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCGAATGAAGAAAAGGTGCTATTGATTAATTTTGCACGCAAGGTTGGTGCTACGGTGACCAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCATGTTCCAGGACATTGAAAGTTTTGAGGGCAATTCTAAATGGACAATGGATCCTAAAAGTTGACTGGATAAGAGCATGCATGGAAGCGATGAATCTCGTAGAAGAAGAACTATATGAAGTTGATCTTGACAACCAAGGGTGTCAGGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGACCAATGAGCCGAAGCTATTCAGTGgcttaaagttttatttttctggtgATTATGATTTGAGTTATAAGAAATATCTTGAAGATTTAGTTGAAGGGGGCGGAGGCGCTGTTTTGAAAAGCAAGGATGAATGTGAAGTAGGAAGAGATGCAAACTTGCTAGCTGTTTACAATCTTGATCCCCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCCATTCTTTGGCAAAGACTGAATGAAGCAGAGGATTTAACTGCCAATACTGTTGGTCACACGTGGATTCTGGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTTAGTTAG 2100 0.4124 MEDSGKSNINSSSKLLNSWMLHFQKLALELKCSLCLNLFKQPVLLPCNHLFCSSCLVDTAEIGICSECALCKTKYTQTDVRHLSLVENIVAIYKNLDATFCANAFQQRSSDNMRVLKQCQTLRNSTGSNKKADKILQNSNGVEVGQNHKSGITMNGKARELEMSHRGGDNNHIAVKPNSTRCSQTEIGGHMEMDLNQVTQSAPDSPPFCDTKGSDNGCSDQNSEKTHNLERSENSSLKRASTGKGNMKERMAQFRSESSASENEDLMRDLKRQKNLTNGDGIIQQSTSYHNKFVDSPCDSGTNFEKDLGALIPSNAPNDLCPNTSICLFCQSSKVSEATGPMLHYANGISVTGDAAMQPNVLHVHKVCIDWAPQVYFVGDTVKNLKAEVARGAKLKCTKCGLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHVDYLLLCPVHSNVKFPSEKSSHNKQAIQNHPVSSQLPFQQSNQLLGASQDYGKKMVFCGSALSNEEKVLLINFARKVGATVTKCWTSNVTHVIAATDANGACSRTLKVLRAILNGQWILKVDWIRACMEAMNLVEEELYEVDLDNQGCQGGPKAGRLRALTNEPKLFSGLKFYFSGDYDLSYKKYLEDLVEGGGGAVLKSKDECEVGRDANLLAVYNLDPPQGCKLGEEVSILWQRLNEAEDLTANTVGHTWILESIAACKLQPFS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03718 699 Pfam BRCA1 C Terminus (BRCT) domain 486 561 IPR001357 -
Tsu07g03718 699 Gene3D BRCT domain 597 693 IPR036420 -
Tsu07g03718 699 MobiDBLite consensus disorder prediction 198 266 - -
Tsu07g03718 699 Gene3D BRCT domain 484 590 IPR036420 -
Tsu07g03718 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 446 IPR013083 -
Tsu07g03718 699 SUPERFAMILY RING/U-box 24 94 - -
Tsu07g03718 699 SMART ring_2 32 71 IPR001841 -
Tsu07g03718 699 ProSiteProfiles Extended PHD (ePHD) domain profile. 324 444 IPR034732 -
Tsu07g03718 699 CDD BRCT_Bard1_rpt1 489 567 - -
Tsu07g03718 699 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Tsu07g03718 699 SUPERFAMILY BRCT domain 599 698 IPR036420 -
Tsu07g03718 699 Pfam BRCT domain, a BRCA1 C-terminus domain 597 698 IPR001357 -
Tsu07g03718 699 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Tsu07g03718 699 SUPERFAMILY BRCT domain 488 575 IPR036420 -
Tsu07g03718 699 ProSiteProfiles BRCT domain profile. 485 574 IPR001357 -
Tsu07g03718 699 MobiDBLite consensus disorder prediction 198 223 - -
Tsu07g03718 699 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 13 698 IPR031099 GO:0006281|GO:0006974
Tsu07g03718 699 Pfam PHD-like zinc-binding domain 365 443 - -
Tsu07g03718 699 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 13 698 - -
Tsu07g03718 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Tsu07g03718 699 SMART BRCT_7 597 693 IPR001357 -
Tsu07g03718 699 SMART BRCT_7 482 564 IPR001357 -
Tsu07g03718 699 Pfam Zinc finger, C3HC4 type (RING finger) 32 71 IPR018957 GO:0046872
Tsu07g03718 699 ProSiteProfiles BRCT domain profile. 595 699 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03718 Tsu-Chr7 43400352 43406960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03718 518 631 Core DNA Replication Machinery Family AT4G02110 32.500 5.61e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03718 K10683 - gmx:100784883 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03718 07 43400352 43406960 Tsu07g03718 07 43400352 43406960 ECH