Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03717 ATGAAAACCATGACGCTTCTACCAAATGACAAGCCTAATAACGAGATAGAGAGTCTTACTGCCATGGTTGCTGGTGTCCATTCCAACGATACTAGTGCGCAACTGGAAGCCACCAAGCTGTTTCGGACCATACTTTCAAGAGATCTGAACCCGCCTATTGAAGAGGTTGTTCAATCTGGTGTTGTGCCACGTTTTGTTGAGTTTCTTGCTAGGGAGGACATGCCTCAACTTCAGTTTGAAGCGGCATGGGCTCTGGCAAACATAGCATGTGGAACTTCTGAGAATACTAAAGTTGTGATTGATCACGGAGCAGTTCCTCTATTTGTTGCGTTGCTTAGTTCACCTAGTAATGATGTTCGTGATAAGGCAGTGTGGGCTTTGGGAAATATTGCTGGTGACTCCCCTACGTATTGTGATCTAGTGCTTGGCCAAGGTGCCCTTGTCCCACTATTGGCCCTATTGAAGAGCGAGTACACTGAACTTTCAATGTTGAGAAATTCCACATGGACTTTATCGAACTTCTGCAAGGGAAAGCCACAACCTGCATTTGAGCTGGTGAGACCTGCACTCCCAGTTCTACAGCGTTTGATTTTTTCCGATGATCCAGAAGTTCTGACATATGCTTGTTGGGCTTTATCATACCTTACTGATGGCACAAATGTAGAAATCCAAGCAATTATTGAGGCAAATGTATGCCACCAACTGGTGCAAATCCTTAAAAATCCACTCCCTTCAGTGTTGATCCCTGCTCTTCGTACAGTGGGAAATATTGTGACCGGAAGTGATATGCAGACTCAGTTTATGATCCATCATGGTGTGCTCCCTTGCCTTTTGAGCTTATTGACACACGACATGCATGAAAAAAGCATCAAGAAAGATGCTTGTTGGACTATATCAAACATTACAGCTGGAACTACGGAACAAATACAGGTCTTATTGCTCCGCTTGTTAGTGTTCTTCAAAATGCACAGTTTGAGATTCATGGTGTTATTGAAGCTGCATGGGCAATATCAAATGCCATATCTGGTGGATTTCATGAGAGATCGAGGTTGCATAAAACCACTATGTGATCTACTTGTTTACCCCGATCCAAAAATTGTCACCGTCTGTTTAGAGGCCCTAGAGAATATTCTGAATGTTGGAGAAGCAGAGAAGATAATGGGTAACTCCGGAGATTCCAACTTGTATGCTCAGATGATAGTGGATTCAGAGGGATTGGAGAAGATTGAAAACCTGCAGAATCGTGACAACTTTGAAATATATGAGAGGGCTGTTAAACTTCTTGAAACTTTCTGGTCGGAAGATGAGTTGATGCTACCTTCAGGCGATGATGATCAATCTGGTTTCATGGCTTCAGTCCCATCTGCTGGATTGAACTTCAACTGA 1386 0.4329 MKTMTLLPNDKPNNEIESLTAMVAGVHSNDTSAQLEATKLFRTILSRDLNPPIEEVVQSGVVPRFVEFLAREDMPQLQFEAAWALANIACGTSENTKVVIDHGAVPLFVALLSSPSNDVRDKAVWALGNIAGDSPTYCDLVLGQGALVPLLALLKSEYTELSMLRNSTWTLSNFCKGKPQPAFELVRPALPVLQRLIFSDDPEVLTYACWALSYLTDGTNVEIQAIIEANVCHQLVQILKNPLPSVLIPALRTVGNIVTGSDMQTQFMIHHGVLPCLLSLLTHDMHEKSIKKDACWTISNITAGTTEQIQVLLLRLLVFFKMHSLRFMVLLKLHGQYQMPYLVDFMRDRGCIKPLCDLLVYPDPKIVTVCLEALENILNVGEAEKIMGNSGDSNLYAQMIVDSEGLEKIENLQNRDNFEIYERAVKLLETFWSEDELMLPSGDDDQSGFMASVPSAGLNFN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03717 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 60 103 IPR000225 GO:0005515
Tsu07g03717 461 SUPERFAMILY ARM repeat 16 435 IPR016024 -
Tsu07g03717 461 PIRSF Importin_alpha 332 461 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu07g03717 461 PIRSF Importin_alpha 6 327 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu07g03717 461 Pfam HEAT-like repeat 165 215 - -
Tsu07g03717 461 Gene3D - 17 433 IPR011989 -
Tsu07g03717 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 302 IPR000225 GO:0005515
Tsu07g03717 461 PANTHER IMPORTIN ALPHA 14 436 - -
Tsu07g03717 461 Pfam Armadillo/beta-catenin-like repeat 50 89 IPR000225 GO:0005515
Tsu07g03717 461 Pfam Armadillo/beta-catenin-like repeat 262 303 IPR000225 GO:0005515
Tsu07g03717 461 Pfam Armadillo/beta-catenin-like repeat 92 131 IPR000225 GO:0005515
Tsu07g03717 461 Pfam Armadillo/beta-catenin-like repeat 222 258 IPR000225 GO:0005515
Tsu07g03717 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 131 IPR000225 GO:0005515
Tsu07g03717 461 PANTHER IMPORTIN SUBUNIT ALPHA 14 436 - -
Tsu07g03717 461 SMART arm_5 261 303 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 219 259 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 49 90 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 393 433 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 92 132 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 338 379 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 134 176 IPR000225 GO:0005515
Tsu07g03717 461 SMART arm_5 178 217 IPR000225 GO:0005515
Tsu07g03717 461 Pfam Atypical Arm repeat 394 436 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03717 Tsu-Chr7 43383207 43386255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03717 37 156 U-box Gene Family AT3G54790 31.148 6.03e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03717 K15042 - gmx:100792804 587.415