Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03711 ATGCATTTGGTTCTCATGGCAGAGTCAGAACCTATAACACTTGATCAAGcactttcaaattcaaactggAAGGAAGCAATGTTGGATGAATTAAGGTCAATTGAAAAGAATGAAACTTGGAACATGGTGAATCTACCAAGTAATAAGAGAGCCATTGATGTGAAATGGGTCTACAAGACTAAGATGAAGCCAAATGGTGAGATTGCAAAATATAAAGCTAGGTTGGTTGCAAAGGGTTTCTTGCAACAACCTGGACTTGACTTTAATGAGATATATGCCCCAGTTGCAAGGATTGAGACTGTGAGATTGATAGTAGCATTGGCTAGTTTGAGAAAATGGAGGTTGAATCAACTTGATGTCAAATATGCATTTCTCAATGGGCCATTGGAAGAGGAGGTTTGTGTGAAGCAGACACCTGACTTTGAGAAGAAGGGTATGGAAAACAAAGTAATGAAGTTGAAGAAGGCTTTGTATGGACTCAAGCAAGCACCACGTGCTTGGAATAAGAAGATCGATGCCTCACAACAGAAGCTAAATTTTACTAAATGTTCAACTGAACATGGTGTGTATGTAAGATTGAACACAAATGATGACTTGATAATCATTTGTCTGTATGTGGATGACCTGTTAGTGACAGGGAGCAATGAAAAAGAGATAGTGAAGCTCAAGAAGCAAATGATGACCGAGTATGATATGACTTATCTAGGAAAATTGTCTTATTTCCTTGGCATGGAATTTGTGTCATGTGAAAAGGGAATTTTTCTGCATCAGAAGAAGTACATTACCGATGTACTCAAGAGGTTTAAAATGCTTGAGTGCAAGCTTGTATCTACACCAGTTGATACTACTGTGAAACTGCAGAAAAGTGACAGTGATGAAGGTGTTGATTCTACATTGTTTAGACAGTTGATCGGCTCACTTAGATATGTCTGTCACTCAAGGCCAGACATTATAGTGTTGGAGTGGCAAGACAATGTTCCAGTTATTATTAAGGCCAGCGGTTTTCAAAAACTGCAGGAGGGGCATTTCAACGCTCAACCCACTCAAGAACGTGTAACAAAGACGTTAAAAAGATTGGAAGAGAATATGCAAGGGCGAGTAAGTTTTCTCCCCGAACTGTTAGTTCCTTTGGTTGGTACTGAAACACATGCTATATCTTATGCGCACTGGGGAAAAGGTGTTCAAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTGGAATTGTTGTTGGAGCTTCTTCAATCTACAAACCAAAAGCAGAAGGGTGAAGCTTCAGCAGCGCTTCACGCAATGGCTGCCAAAGGAATGTGTGCTTCTATTCTTGATCCTGCTCCTACATCACCAACTCCTCAGGTTTACTTGGGTGAGGAATATGTAAACAATCCTAAACTTTCGGACGTCACATTCATAGTTGAAGGCTCTATGTATGAACTGACTTTCTATGggaattttagatttatatacACTGGAACTGTGGATGTTGATTTGAATGTTGCTGTGGACCTCCTTAAAGCTGCAGATCAATATCTTCTTGACAGTCTTAAGCGTATCTGTGAATATACCATTTCTAAGGACAGCTCTGTGGAAAATGTTCCGCTAATGTACACGATGTCAGAGACTTTCAATATCCGGCTCCTCTAA 1686 0.3891 MHLVLMAESEPITLDQALSNSNWKEAMLDELRSIEKNETWNMVNLPSNKRAIDVKWVYKTKMKPNGEIAKYKARLVAKGFLQQPGLDFNEIYAPVARIETVRLIVALASLRKWRLNQLDVKYAFLNGPLEEEVCVKQTPDFEKKGMENKVMKLKKALYGLKQAPRAWNKKIDASQQKLNFTKCSTEHGVYVRLNTNDDLIIICLYVDDLLVTGSNEKEIVKLKKQMMTEYDMTYLGKLSYFLGMEFVSCEKGIFLHQKKYITDVLKRFKMLECKLVSTPVDTTVKLQKSDSDEGVDSTLFRQLIGSLRYVCHSRPDIIVLEWQDNVPVIIKASGFQKLQEGHFNAQPTQERVTKTLKRLEENMQGRVSFLPELLVPLVGTETHAISYAHWGKGVQIRVVLALAHLCSPDDRKTIFIDNNGLELLLELLQSTNQKQKGEASAALHAMAAKGMCASILDPAPTSPTPQVYLGEEYVNNPKLSDVTFIVEGSMYELTFYGNFRFIYTGTVDVDLNVAVDLLKAADQYLLDSLKRICEYTISKDSSVENVPLMYTMSETFNIRLL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03711 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 499 558 IPR044282 -
Tsu07g03711 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 321 491 IPR044282 -
Tsu07g03711 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 499 558 - -
Tsu07g03711 561 SUPERFAMILY DNA/RNA polymerases 36 319 IPR043502 -
Tsu07g03711 561 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 37 280 IPR013103 -
Tsu07g03711 561 Gene3D Potassium Channel Kv1.1; Chain A 490 561 IPR011333 -
Tsu07g03711 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 321 491 - -
Tsu07g03711 561 SUPERFAMILY POZ domain 471 539 IPR011333 -
Tsu07g03711 561 Pfam BTB/POZ domain 500 539 IPR000210 GO:0005515
Tsu07g03711 561 Gene3D - 271 458 IPR011989 -
Tsu07g03711 561 SUPERFAMILY ARM repeat 287 447 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03711 Tsu-Chr7 43271364 43274148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03711 3 317 Receptor kinase-like Gene Family AT4G23160 37.812 4.50e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu07g03711 RVT_2 1.3e-80 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03711 - - dcr:108221786 343.969