Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03707 ATGGGGAGTAGGGTTAGGAAACCGAGGAAAAGATTGCAGAAGATAATGAACTGTCTTTGTTCGGGGGAGATTGTAAAAGAACAAGAAGATACAATGGTTCCTAGTTCGTCCGAATCACTTGCAACTAAGGATTTTTTTTCTGCAACGGCAAGTGGATTTTCTGGCCAAGATGGACAGGTTGAGAGGAGGCTGGATTCTGTTAACATAGAACAAGCTGAATTGTCGTTGCGTGAGAGTGGTATCTTGAACTATGAGGAAGCTAGAGCTCTGTTAGGGAGATATGAATATCAGGAAGGAAATATAGAAGCCGCTTTGCATGTTTTTGAAGGCATAAATATAGCTGCTGTGACTCCCAAGATAAAAGATTTTTTTGCCAAAAGCAGAGAACGCCCCAAGAGACGCTCTCGGAATTACACTACTCCACCGATGTCTATACATACAGCTGGATTGCTATTAGAAGCAATCTTGTTAAAGGCAAAATGTTTGCAGGTTCTTGGAAGGTTTGAAGAATCTGCCCAAACATGTAAAGTTATTCTGGACATGATTGAGTCTTCTTTACCTGAAGGCTTGCCTCGAAACTTTGGCGCCGAATGTAAATTGCAGGAGACTTTAAGCAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGATTGTCCACGCGAAGTTATTTTGTCTTATAGGCGTGCACTCCTTCATCGATGGAATCTTGATGCAGAGACCACAGCAAAAATTCAGAAAGAATTTGCCATTTTTCTTCTATATAGTGGAGCGGAAGAAATTCCCCCAGATTTTCGTTCCCATATGGACAGTTCATTTGTACCAAGAAATAACATTGAAGAGGCTATTCTTCTTTTAATGATTTTGCAAAGAAAAGTCTCTCTAAATAAAATTGAGTCGGATCCTTCAATTTTGGAGCACCTTTCGTTTGCTCTATCAGTTTCTGGGGATTTGACAGCTTTAGCCAAACAATGGGAAGAATTACCCCCTGGTACTGTCAATCGAAGAGAAAGGTACCATGCTCTTGCTCTTTGTTATTATGGAGCAGATAAGGACTTGGTGGCCCTTAATCTTCTTAAAAAGTTGTTGAGTAGTAGTGAGGACCCAAAACACGTTCCTGCTTTGTTAATGGCTTCTAAGATATGCTGTGAAAACCCTGAACTTGCAAAAGATGGGGTTAGCTACGCTTGCAGAGTGCGTGAGAACTTGGATGGAAAATGTAATCAGTTGGAAAGTCTCGCCAATTGCTTACTCGGTGTTTCACTTTCAACAGACTCAAAATTTGCTGTTTCTAATTCTGAGACATTCGAGAGACAATCTGAGGCACTTCATTCACTAGAAACTGCAAGCACTATGACCAGAACGAATGACCCTCTTGCACTTTACTATTTAAGTTTAGAATGTGCAGAACAAAGGAAGTTGGATTCTGCACTTCATTATGTAGAACGCTCTCTAAGCTTAGAAGCTGGGTCTAATATTAAAGGCTGGTTATTGTTAGCCCGGATATTATCAGCACAAAAACAGTTTTTAGATGCTGAATCTATTGTTGATTCTGCTTTGGATCGGACTGGTATATGGGATCAAGGAGTTTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGGAAGGTGCCAAGTGCCATTGAGACATATATTCGGCTTCTTGCCATTTTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAACGAAGCTATATAAGGACAGCAGAGATCATGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGTAATAGGTACTATGCTCGAAGCAAAGGGTCATTACAAAGAGGCTCTAAAATCTTTTCGCGATGCTTTGAACCTTGATCCTACACATGTCCCTAGCTTGATATCAACTGCTGTCATTCTTAGACAGTACGGTACTCCATCAAATCCTGCCGCCAGAAGCTTTCTAATGGATGCACTAAGGCTTGATAGAACTAATGCTTCTGCTTGGCATCATCTTGGCATTCTTCACAAGGCTGAAGGTAGAGTTTTTGAAGCTGCGGAATGTTTTCAGGCAGCAAATTCtcttgaagaatcagaaccgGTGGAACCTTTCAGATGA 2190 0.4059 MGSRVRKPRKRLQKIMNCLCSGEIVKEQEDTMVPSSSESLATKDFFSATASGFSGQDGQVERRLDSVNIEQAELSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGINIAAVTPKIKDFFAKSRERPKRRSRNYTTPPMSIHTAGLLLEAILLKAKCLQVLGRFEESAQTCKVILDMIESSLPEGLPRNFGAECKLQETLSKAVELLPELWKLADCPREVILSYRRALLHRWNLDAETTAKIQKEFAIFLLYSGAEEIPPDFRSHMDSSFVPRNNIEEAILLLMILQRKVSLNKIESDPSILEHLSFALSVSGDLTALAKQWEELPPGTVNRRERYHALALCYYGADKDLVALNLLKKLLSSSEDPKHVPALLMASKICCENPELAKDGVSYACRVRENLDGKCNQLESLANCLLGVSLSTDSKFAVSNSETFERQSEALHSLETASTMTRTNDPLALYYLSLECAEQRKLDSALHYVERSLSLEAGSNIKGWLLLARILSAQKQFLDAESIVDSALDRTGIWDQGVLLRTKAKLQIAQGKVPSAIETYIRLLAIFLVQRKTFGSRTKLYKDSRDHARNLEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHVIGTMLEAKGHYKEALKSFRDALNLDPTHVPSLISTAVILRQYGTPSNPAARSFLMDALRLDRTNASAWHHLGILHKAEGRVFEAAECFQAANSLEESEPVEPFR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03707 729 SUPERFAMILY TPR-like 440 614 IPR011990 GO:0005515
Tsu07g03707 729 Gene3D Tetratricopeptide repeat domain 585 726 IPR011990 GO:0005515
Tsu07g03707 729 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 8 729 - -
Tsu07g03707 729 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Tsu07g03707 729 PANTHER PROTEIN NPG1 8 729 IPR043376 -
Tsu07g03707 729 ProSiteProfiles TPR repeat profile. 690 723 IPR019734 GO:0005515
Tsu07g03707 729 SUPERFAMILY TPR-like 533 720 IPR011990 GO:0005515
Tsu07g03707 729 Pfam Tetratricopeptide repeat 621 653 IPR019734 GO:0005515
Tsu07g03707 729 Gene3D Tetratricopeptide repeat domain 68 584 IPR011990 GO:0005515
Tsu07g03707 729 SMART tpr_5 690 723 IPR019734 GO:0005515
Tsu07g03707 729 SMART tpr_5 586 619 IPR019734 GO:0005515
Tsu07g03707 729 SMART tpr_5 620 653 IPR019734 GO:0005515
Tsu07g03707 729 SMART tpr_5 152 185 IPR019734 GO:0005515
Tsu07g03707 729 SMART tpr_5 494 527 IPR019734 GO:0005515
Tsu07g03707 729 SMART tpr_5 459 492 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03707 Tsu-Chr7 43241397 43251097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03707 5 729 Calmodulin-binding Proteins AT4G28600 54.865 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03707 K21843 - gmx:100809498 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03707 07 43241397 43251097 Tsu07g03707 07 43241397 43251097 ECH
Tsu01g02631 01 29535032 29539722 Tsu07g03707 07 43241397 43251097 PCT