LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g03701	ATGGATTCGGCGAGGAGTTGGTTATCGAAGTTTCAACCGCGAGATAAATTGAGAGCTTCAACAAGGAAGAAAGATGATATTAATATCGGAATTGAAGATTCTAATGCGTCTCTTGATGATGATGCTCTTTCTAGCGTCACCAAGCAGAAAGTTGCCGCTGCTAAACAATATATTGAGAATCATTACAAGGAACAAATGAAGAATCTTCAAGAGAGAAAAGACCgGAGAACAATTTTGGAAAAGAAGTTGGCTGATGCCGATGTCTCTGAGGAAGATCAAAATAATCTACTTAAATATTTAGAGAAGAAGGAAACGGAATATATGCGTCTTCAAAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTGTGTAGGGAAAAGACTACAGAGCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTTCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTCCCGGGAGGGGATATGATGACTCTTCTTATGAGAAAGGATACATTGACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACGGTTCTAGCTATCGAATCTATACATAAACACAATTATATACATAGGGATATTAAACCCGACAACTTATTACTTGATAAATATGGGCACTTGAAACTATCAGATTTTGGACTATGTAAACCGTTAGACTGTAGTACACTTGAAGAATCAGATTTGTCTGTTGGCCAGAATGCAAATGGAACTGCACAGAATGATGATCGTACAGGTCCAAAACGTACACAACAAGAACAGTTGGAAAACTGGCAGAAAAATAGGAGGACACTTGCTTATTCTACCGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTCGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCATCTGAAATTTCCTGAAGAAGCAAGGCTATCTCCGGAGGCCAAAGATCTTATAAGTAACCTTTTGTGTAATGTCAACCAGAGACTGGGGTCAAATGGTGCAAATGAAATAAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAAAAGTTGTATCAAATGGAAGCAGCATTTATTCCTGAAGTCAATGACGAGTTAGAtactcaaaattttgaaaaatttgaagagTCTGACAGCCAGACTCATTCATCATCAAGATCTGGCCCATGGAGAAAGATGCTTTCATCTAAGGACTTGAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTTAACGACTATCAAGTTCCTGGGATGGCTGAGCTAAAGAAAACTTCCAAACCAAAGAGGCCATCTGTCAAGTCGTTGTTTGATGGCGACTCCGAGACTTCTGAGGCGTCTGATATTTCAGAAGTGTCTGCAACCAATCAACCTACTCAATGA	1611	0.3836	MDSARSWLSKFQPRDKLRASTRKKDDINIGIEDSNASLDDDALSSVTKQKVAAAKQYIENHYKEQMKNLQERKDRRTILEKKLADADVSEEDQNNLLKYLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTEHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDLSVGQNANGTAQNDDRTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISNLLCNVNQRLGSNGANEIKSHPFFEGVQWEKLYQMEAAFIPEVNDELDTQNFEKFEESDSQTHSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKTSKPKRPSVKSLFDGDSETSEASDISEVSATNQPTQ	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g03701	536	MobiDBLite	consensus disorder prediction	498	536	-	-
	Tsu07g03701	536	SUPERFAMILY	Protein kinase-like (PK-like)	93	472	IPR011009	-
	Tsu07g03701	536	MobiDBLite	consensus disorder prediction	279	301	-	-
	Tsu07g03701	536	PANTHER	SERINE/THREONINE-PROTEIN KINASE	27	520	-	-
	Tsu07g03701	536	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Tsu07g03701	536	Pfam	Protein kinase domain	121	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g03701	536	SMART	serkin_6	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g03701	536	Gene3D	Phosphorylase Kinase; domain 1	110	205	-	-
	Tsu07g03701	536	Gene3D	Transferase(Phosphotransferase) domain 1	206	435	-	-
	Tsu07g03701	536	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Tsu07g03701	536	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	27	520	-	-
	Tsu07g03701	536	ProSiteProfiles	AGC-kinase C-terminal domain profile.	419	491	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Tsu07g03701	536	MobiDBLite	consensus disorder prediction	513	536	-	-
	Tsu07g03701	536	Pfam	Protein kinase C terminal domain	437	481	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Tsu07g03701	536	SMART	pkinase_C_6	419	483	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Tsu07g03701	536	CDD	STKc_NDR_like	118	482	-	-
	Tsu07g03701	536	ProSiteProfiles	Protein kinase domain profile.	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g03701	Tsu-Chr7	43190510	43197838	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g03701	1	513	AGC Kinase Gene Family	AT2G20470	78.378	0.0	849

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Tsu07g03701		Pkinase	4e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g03701	K08790		-	gmx:100805940	956.436

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g03701	07	43190510	43197838	Tsu07g03701	07	43190510	43197838	ECH
	Tsu07g03701	07	43190510	43197838	Tsu01g01452	01	13957722	13963052	PCT
	Tsu01g02647	01	29750054	29759167	Tsu07g03701	07	43190510	43197838	PCT