Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03680 ATGTCTCTCTCGTATGCCTTTCTTCTCTTGAAGATATTGTTTGTAATTTCTTTAATTGTTTTGTTGCGATTGTGTTATTTTCAGGTTCTTCAAAGTGGGGAATTGTTAATAAAGTTACAAAACACTTCACTTAGGATTTGTCACACAATTGATAGATCCCCAAACTCAACTTCATCTGCCTCAGTTTTGGATAATCTTCAGCACCATATACAGGAACTTCGGTGTCTTGAAAAGGAATCAACAACTGTCTATATAGAAGAAGTACTGAGAAATCAAAAGGATGATACTAAACCTAGCTATGAACGTTTAAGGGAAATTATAGAGTTACTTAAATTGACATCAAACCAGGAGCTTCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAACGCGGAACTCAACAAAACAAAAGGGGAGTTGGATGAATTTAACCAAATTGCGAATCTGGTTTGCAATTTACGTGATTATGTGATGAAAACTAAATGCCCTGAAGTCAAAAGTGGAGTCTCAGTCCCAACATACTTTCGATGCCCTTTATCACTCGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATATGAGAGACAGTCCATCCAAAAGTGGCTTGATAATGGGCTGAATGTTTGTCCCAAGACTCACCAGAGACTAACTCACACAAATCTTATTCCTAATTATACTGTTAAAGCTATGATAACAAATTGGTGTGAAGAAAATAATGTCGAACTTCCCAATAACTCAAAGCAGAGTAATTCTACTCAGAGTTCACCCATGACAGATCATTTATTGCATCAAGATTTTGACCGTGTCTGTAGTTTCGGGTCATCACATAGTAGCAACTCCAATTCAAAATCATCTCTTCAAACTGGAAATGCATTTGAGAAGCAAAAAGGTGACAACTCTTCCAGAGTAAGCAGTGAATCCAATAGATGCGAGAACGGTGAGACAGAAAAGTTTGAGCAACAATCTCTTGCTCCTTCATGTAGTCACAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTGTGTACCTTCAGTTTCAAAAAACGTGTCAGGTATATCAAAAACGTTATCTGGAGATATTCATAATAATATGTTTCCTGCTTCTCCTGCATATAAAGAATTCGGGGATTTTCCAACAGTACCACGAGAGCAATTTCAAAGCCCAGGATCAAAAAATGCAACAATGGAGAATGAAAATAAgtacaataacaataataatattgttattactagccattcaaattcaaaagatGATGCCCGTCCTGCTTCCAACTCGGGATCAGATAAATTGACCACCACATCTCATGTCAGTAAGTTGATCGAAGATCTACGAAGTCAATCAAATGAAACACAAGCTGCTGCTGCTGAAGAATTGCGACTCCTTACCAAGTTTAACATGGAAAACCGTATCATTGTAGGGCAATGTGGGGCTATCATGCATTTACTTCCACTGCTATATTCAGAGATGAAGATTACACAGGAGCATGCTGTGACAGCAATACTGAATTTGTCGATTAATGAAGACAACAAGACCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCTATGTTTTGAAGACAGGAAATAACGGTGCCAAGGAAAATTCTGCTGCAGCTCTATTCAGCCTCTCGGTACCAGAAAACAATAAGGCAAAAATTGGTCGTTCCGGTGCTATTAAAGCGTTAGTGGAACTTCTAGCTTCTGGAACTCTTAGAGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGACAATAAAGCTCGTATGGTTCAAGCTGGAGCGGTGAAGTTTCTGGCTATGCTATTGGATCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTATCAACGATTCCAGAGGGTCGAGTAGAAATTGTTAGGGAAAGGGGAATACCCTTACTGGTTGAACTCGTGGAGTCGGGTTCTCATAGGGGAAAGGAAAATGCTgcatccattctcttgcaactAAGCCTCCATAGCCGTAAGTTTTGTACCCTGGTTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTATCCCAGTTTGGTACGCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTCCGTAACCAACGCACAGAAGCTCCCGGTAGAGGAAAATCATGA 2187 0.3859 MSLSYAFLLLKILFVISLIVLLRLCYFQVLQSGELLIKLQNTSLRICHTIDRSPNSTSSASVLDNLQHHIQELRCLEKESTTVYIEEVLRNQKDDTKPSYERLREIIELLKLTSNQELLKESIAVEKERLNAELNKTKGELDEFNQIANLVCNLRDYVMKTKCPEVKSGVSVPTYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDNGLNVCPKTHQRLTHTNLIPNYTVKAMITNWCEENNVELPNNSKQSNSTQSSPMTDHLLHQDFDRVCSFGSSHSSNSNSKSSLQTGNAFEKQKGDNSSRVSSESNRCENGETEKFEQQSLAPSCSHSRSESFSSSISSTDCVPSVSKNVSGISKTLSGDIHNNMFPASPAYKEFGDFPTVPREQFQSPGSKNATMENENKYNNNNNIVITSHSNSKDDARPASNSGSDKLTTTSHVSKLIEDLRSQSNETQAAAAEELRLLTKFNMENRIIVGQCGAIMHLLPLLYSEMKITQEHAVTAILNLSINEDNKTLIMEAGAIEPLIYVLKTGNNGAKENSAAALFSLSVPENNKAKIGRSGAIKALVELLASGTLRGKKDAATALFNLSIFHDNKARMVQAGAVKFLAMLLDPADGMVDKAVALLANLSTIPEGRVEIVRERGIPLLVELVESGSHRGKENAASILLQLSLHSRKFCTLVLQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRNQRTEAPGRGKS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03680 728 Gene3D - 389 517 IPR011989 -
Tsu07g03680 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 483 525 IPR000225 GO:0005515
Tsu07g03680 728 SMART Ubox_2 175 238 IPR003613 GO:0004842|GO:0016567
Tsu07g03680 728 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 27 723 - -
Tsu07g03680 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 606 647 IPR000225 GO:0005515
Tsu07g03680 728 SUPERFAMILY RING/U-box 170 247 - -
Tsu07g03680 728 Pfam U-box domain 172 243 IPR003613 GO:0004842|GO:0016567
Tsu07g03680 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 246 IPR013083 -
Tsu07g03680 728 MobiDBLite consensus disorder prediction 277 312 - -
Tsu07g03680 728 MobiDBLite consensus disorder prediction 416 439 - -
Tsu07g03680 728 PANTHER U BOX DOMAIN-CONTAINING 27 723 - -
Tsu07g03680 728 Pfam Armadillo/beta-catenin-like repeat 556 593 IPR000225 GO:0005515
Tsu07g03680 728 Pfam Armadillo/beta-catenin-like repeat 474 511 IPR000225 GO:0005515
Tsu07g03680 728 Gene3D - 518 722 IPR011989 -
Tsu07g03680 728 MobiDBLite consensus disorder prediction 277 336 - -
Tsu07g03680 728 CDD RING-Ubox_PUB 176 218 IPR045210 -
Tsu07g03680 728 SUPERFAMILY ARM repeat 439 715 IPR016024 -
Tsu07g03680 728 MobiDBLite consensus disorder prediction 321 336 - -
Tsu07g03680 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 565 607 IPR000225 GO:0005515
Tsu07g03680 728 SMART arm_5 554 594 IPR000225 GO:0005515
Tsu07g03680 728 SMART arm_5 635 675 IPR000225 GO:0005515
Tsu07g03680 728 SMART arm_5 595 634 IPR000225 GO:0005515
Tsu07g03680 728 SMART arm_5 472 512 IPR000225 GO:0005515
Tsu07g03680 728 SMART arm_5 513 553 IPR000225 GO:0005515
Tsu07g03680 728 Coils Coil 120 147 - -
Tsu07g03680 728 ProSiteProfiles U-box domain profile. 171 245 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03680 Tsu-Chr7 42985718 42991504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03680 27 728 U-box Gene Family AT3G54790 52.334 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03680 - - mtr:MTR_7g097020 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03680 07 42985718 42991504 Tsu07g03680 07 42985718 42991504 ECH