Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03676 ATGTTGTTTTCCATTCCATTGCTTATTGTCTTTTCAAGCCTTTGCTTGTTAACCAAGCAAACAGAAATAAAAGAGAGTGACACAGACATCACTGTCGACCATAATACTGAACAAGCAAGTTACGTTGAAGAACCTATGTCAAATTATCGAAGCAAGGAAGTTTTTAAAGAGTGTAGAAAAAACCACGCTTCAAGCATTGGGGGCTATGCTCTTGATGGTTGTTGCGAGTTTTTACCGGCAGGAGCGGAAGGTActagtgatttttttaaatgtgcGGCTTGTTACTGTCATAAAAATTTTCACCGCAAAGAAACTGTTGCTAAAGAACCGACTCATTTTCTATCCAAAATCACCTATAATCCTCAACCAACTCCCATCTCGACGGTCTTTCAGACTCCGAATGGTTACCACCATATGACCGGGTCATCCAGTGAGACCACAACTGCACCTGCTTTTCCTCCTGTTGTTATCCATGATGGGGATCACTTTCATGTTACCAATCCAATCAATCGTGGTGGTACTAGTGGTGGCGGAGAAAGTTCATCGAGCTCTAAGAAAAGGTTTAGGACTAAATTTAGTCATGAACAAAAGGAGCATATGTTGGATTTTGCTGCGAAAATAGGTTGGAGAATTAAGAAACAAGATCAAAATGTTGTTGACATTTTTTGCAACAAGATTGGGGTCAAGTTTCAAGTGTTTAAGGTTTGGATGCAAAACAATAGACATACCATTGGCAAAAAGCCTTAG 747 0.3896 MLFSIPLLIVFSSLCLLTKQTEIKESDTDITVDHNTEQASYVEEPMSNYRSKEVFKECRKNHASSIGGYALDGCCEFLPAGAEGTSDFFKCAACYCHKNFHRKETVAKEPTHFLSKITYNPQPTPISTVFQTPNGYHHMTGSSSETTTAPAFPPVVIHDGDHFHVTNPINRGGTSGGGESSSSSKKRFRTKFSHEQKEHMLDFAAKIGWRIKKQDQNVVDIFCNKIGVKFQVFKVWMQNNRHTIGKKP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03676 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 247 - -
Tsu07g03676 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 35 247 - -
Tsu07g03676 248 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 104 IPR006456 -
Tsu07g03676 248 SUPERFAMILY Homeodomain-like 172 246 IPR009057 -
Tsu07g03676 248 Pfam ZF-HD protein dimerisation region 54 105 IPR006456 -
Tsu07g03676 248 Gene3D - 172 245 - -
Tsu07g03676 248 MobiDBLite consensus disorder prediction 168 183 - -
Tsu07g03676 248 MobiDBLite consensus disorder prediction 167 190 - -
Tsu07g03676 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Tsu07g03676 248 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 241 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03676 Tsu-Chr7 42968097 42968843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03676 51 244 ZF-HD Transcription Factor Family AT4G24660 44.330 4.70e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu07g03676 ZF-HD_dimer 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03676 - - mtr:MTR_8g069080 254.603