Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03672 atgGTGAGAGCTCCATGTTGTGAGAAAATGGGGTTGAAGAAAGGTCCATGGACACAAGAAGAAGATACAATTCTCATCAATCACATAAACACTCATGGCCATTCCAATTGGCGTGCTCTTCCAAAACAAGCTgGGTTGTTAAGGTGTGGAAAGAGTTGTAGATTGAGATGGGCAAATTATTTGAAGCCAGATATCAAACGGGGTAATTTTactaaagaagaagaagatgcaATAATCAATTTGCACCAAATGTTGGGAAACAGATGGTCAACTATAGCAGCAAGGTTACCGGGACGAACAgacaatgaaataaaaaatgtatggCACACCCATTTGAAGAAGAGGCTGCCACAAAACCAACAAGGACACAACAACATcccaaaaagaaataagaaacaAACCAATTTGGACTTTGAAGCCTCCAAATCAGACCAAGATATCAAACAAGAACAAAATAATCTTGATGACATGCCACAATGTTCTAGTGACATTTCATACCATAATAATAGTAGCATTGCTACTACTACTAAAGATGATGTTGATTCAGCAGAAAATAATTTTGCATTGGATGATGATTTTTGGTCTGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTGGTAGTGTTATGGACATTGGTGCTGATAATTATCAATTTCAAGCTTCATTCTCTCCATTAGGGATTGAAGAAGGAGTGTTTAATTCAAGTTCATTGAGTCAAGATATGGACTTTTGGTATGATGTTTATGCAAGAGCTGGGGAAATTACTGAGTTACTTGAATTGTGA 792 0.3422 MVRAPCCEKMGLKKGPWTQEEDTILINHINTHGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQGHNNIPKRNKKQTNLDFEASKSDQDIKQEQNNLDDMPQCSSDISYHNNSSIATTTKDDVDSAENNFALDDDFWSEVLSSDNSSNETSGSVMDIGADNYQFQASFSPLGIEEGVFNSSSLSQDMDFWYDVYARAGEITELLEL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03672 263 PANTHER TRANSCRIPTION FACTOR MYB15 1 260 - -
Tsu07g03672 263 CDD SANT 69 112 IPR001005 -
Tsu07g03672 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Tsu07g03672 263 CDD SANT 16 61 IPR001005 -
Tsu07g03672 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tsu07g03672 263 Gene3D - 11 67 - -
Tsu07g03672 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g03672 263 MobiDBLite consensus disorder prediction 115 146 - -
Tsu07g03672 263 MobiDBLite consensus disorder prediction 115 129 - -
Tsu07g03672 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g03672 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g03672 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g03672 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g03672 263 MobiDBLite consensus disorder prediction 130 146 - -
Tsu07g03672 263 Gene3D - 69 153 - -
Tsu07g03672 263 SMART sant 66 114 IPR001005 -
Tsu07g03672 263 SMART sant 13 63 IPR001005 -
Tsu07g03672 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03672 Tsu-Chr7 42953706 42955182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03672 1 263 MYB Transcription Factor Family AT2G31180 51.321 6.96e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g03672 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03672 K09422 - gmx:100775603 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03672 07 42953706 42955182 Tsu07g03672 07 42953706 42955182 ECH
Tsu07g03672 07 42953706 42955182 Tsu01g01461 01 14039108 14040973 PCT