Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03666 ATGAATTTTGATTCTCCTTTCctccaaaaccaaaatcaaaatcttcTATGCTTCCCTCAAAATTCTTTCTCTAATTTCTCTTGGGAATTAGAAGATTTCattaatttcttcaatgatGACATCAACTTCAACAACGATTCACAATCACAAACCAAAGAATCATTATCATCGATCGAATCCAACTCTTCAGGATCTGTACTGAGCAACGAACTACTAGAAGTCTCGTCGAATACAACTTATACACAAGTCAAAGAGACACAAATATCGTCGTCATCACCTTCACCGCCGCTGATTAAGGAAAGTAACAAAAGGGCATTTAGAGGAGTCAGAAATAGGCCATGGGGAAAATTTGCGGCCGAGATAAGAGACTCAACAAGAAAAGGGGTTAGAGTATGGATTGGAACATTTGACACGGCTGAAGCAGCCGCTTTAGCTTATGATCAAGCGGCTTTCTCTACGAGAGGTTCGTTAGCCGTGTTAAATTTTCCTGAGGAAGTGGTTAGAGAATCACTTAAAGACATGGCTAGAAATTCTAAGCCTTTAGAAGAAGtggtgcgtacaagaggGAGAGACGGTAGGATTAGATATCCCGGCGTAGGACGTGGAGTTTCCATTCCTGTTGAGCAGGAACAGGAAATTGAGCAGCATATGATGCAGGAGGATGACGATGTTGCGCAGCATGGATGGCCTGGAGGACCGCTTGATACGAGTATTCTGACGCGGTACTCAAACCATGTTgctcgttatatatggtttggcaCGGTATAA 768 0.3841 MNFDSPFLQNQNQNLLCFPQNSFSNFSWELEDFINFFNDDINFNNDSQSQTKESLSSIESNSSGSVLSNELLEVSSNTTYTQVKETQISSSSPSPPLIKESNKRAFRGVRNRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMARNSKPLEEVVRTRGRDGRIRYPGVGRGVSIPVEQEQEIEQHMMQEDDDVAQHGWPGGPLDTSILTRYSNHVARYIWFGTV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03666 255 PANTHER DNA-BINDING DOMAIN 24 180 IPR044808 GO:0003700|GO:0009873
Tsu07g03666 255 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
Tsu07g03666 255 Gene3D AP2/ERF domain 105 165 IPR036955 GO:0003700|GO:0006355
Tsu07g03666 255 CDD AP2 106 164 IPR001471 GO:0003700|GO:0006355
Tsu07g03666 255 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Tsu07g03666 255 SMART rav1_2 105 169 IPR001471 GO:0003700|GO:0006355
Tsu07g03666 255 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Tsu07g03666 255 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 180 - -
Tsu07g03666 255 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Tsu07g03666 255 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03666 Tsu-Chr7 42897633 42904408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03666 103 174 AP2-EREBP Transcription Factor Family AT2G31230 80.556 1.07e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g03666 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03666 K14516 - gmx:100779524 181.415