Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03664 ATGTTTTTCTTCAACAACATTGACTCTGATTCTTCATCCTCTAGTGGTGAAATGGATTTACAAAAGCCCACGTACAATCTTACATACAATGGGCATGTCAAAGAAGAAAATCCACCACCACCAGTATCAATTGCtccaaaaaccctaaatccaCAACCGACACCATTTAAACGAGAGAAAAGGCTCTATAGAGGAGTGAGGACACGACCATGGGGAAAATATGCAGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGAGTGTGGATTGGAACATTTGACACACCTGAAGCAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTAACACGAGGATGTAGGGCAATCCTTAATTTCTCCGAACATGTTGTGAAGGAATCTCTTCAAACCATGAATTTGAAGACATTGCTAAATCGCGGTAGCTCACCCTTGTTGGAACTTAAAAGGATGCATGTCTTGAGAACAAGATCTAAGACAACTTGTAGTAAAAAGGTTAAAAGGGATTCCAAGAATGGTGTGTTGAAAAATGCTCAAAATGTGTTGGTGTTGGAAGATATGGGTTCTGAATATCTAGAGCAACTTTTGATGAGCTCTATTTGA 600 0.3883 MFFFNNIDSDSSSSSGEMDLQKPTYNLTYNGHVKEENPPPPVSIAPKTLNPQPTPFKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGCRAILNFSEHVVKESLQTMNLKTLLNRGSSPLLELKRMHVLRTRSKTTCSKKVKRDSKNGVLKNAQNVLVLEDMGSEYLEQLLMSSI 199
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03664 199 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Tsu07g03664 199 MobiDBLite consensus disorder prediction 1 20 - -
Tsu07g03664 199 MobiDBLite consensus disorder prediction 35 55 - -
Tsu07g03664 199 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 PANTHER DNA-BINDING DOMAIN 51 196 IPR044808 GO:0003700|GO:0009873
Tsu07g03664 199 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 Pfam AP2 domain 63 108 IPR001471 GO:0003700|GO:0006355
Tsu07g03664 199 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 51 196 - -
Tsu07g03664 199 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu07g03664 Tsu-Chr7 42866364 42866963 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03664 57 198 AP2-EREBP Transcription Factor Family AT3G23240 52.817 2.50e-45 147
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g03664 AP2 1.9e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03664 K14516 - gmx:100818907 189.504
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03664 07 42866364 42866963 Tsu01g01466 01 14136119 14136873 PCT
Tsu01g02710 01 30823784 30824104 Tsu07g03664 07 42866364 42866963 PCT