Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03656 ATGGCTAGTGAGAGGTTTTGTAAGAATGAAGAAGACAAAGCTATGTTGGAATCTGTATTGGGTGCTGAAGCTGTTGCTTTTTTTAGCTCAGCTGtttccaaacatgttttttcgGATGTTATTGTTCCGCCTAATCTTGACTTGGGTGTGCACAAAAGGTTGTGTCATATTGTTAAGGGTTCCAAGTGGAATTACTCGATTTTGTGGCAGGTTGCCGGTTTGAAATCCGGTGGTTATGTGTTGAAATATGGTGAGGGACACTGTCAGGATCCCAAGGGGGGTCCAAGGAATGAGCAGGAGAGGGAGAGAGATGATGTTAGGAGGAAGGTGTTAGGGAAGATTCATGCTTGTTGGGGTGGATCTAATTCAATTGAGAATGTTTATAAGAAATTGGATAATGTCTCGGATTTGTATATGTTTTACTTGACCTCTGTTTACTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAGTTCATTTAAGTGTGCGAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTAAATCAGTATGAATCAAGGTCGTTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTGTACCTCTCAAGGCTGGAGTTATTGAGCTTGGTTCAATGGAGGGGGTGCCTGAAGATTTGGGTTTTTTGGATATGGTCAAGACAACATTTGGAGAATCTACTTCTGGACCGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGCTTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCTAAGGTGGAAGATGATTCTGGTTTCACTTCCGACTCTTATGAAGTACAAGCGCTTGGGGCTAACCATGCTTTTGGTAATTCTTCCAATGGGGGTGTAGGAGATAGTAATGATGCAAAAATCTTCCCTCAGTTAAGTCAAATGGTTCCTGGAAATTTTACTTCTCAAGCAAGAGTTTCTTCTATTGAATTGGGTAATGAAGACTCATCCTCGCCTCTTGGAGACGAGAGGAAGCCTAGGAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCTCTGAATCATGTTGAAGCGGAGAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTCGGTGATGCTATAACCCATATCACCGATCTCCAGAAGAAGATCAAGCTGTTGGAAACTGAAAAAAGCATGGTTAATAATAAGGGCCATCAGTTGTCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGATGCGGTTGTGCGTGTGAGCTGCCCCTTGGATATTCATCCGGTTTCTGGAATCGTTAAAGTGTTCCGAGAGCATCAAATTGCAGCTCAAGAGGCCAATGTTTCAACTGCACAAGATAAGGTAATACATACATTCTCTATCAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTGGAAGCATCTTTAGCcaaaaattaa 1512 0.4173 MASERFCKNEEDKAMLESVLGAEAVAFFSSAVSKHVFSDVIVPPNLDLGVHKRLCHIVKGSKWNYSILWQVAGLKSGGYVLKYGEGHCQDPKGGPRNEQERERDDVRRKVLGKIHACWGGSNSIENVYKKLDNVSDLYMFYLTSVYYVFGFNSQYGPGSSFKCAKPNWSSDAGSCLNQYESRSFLAKSAGFQTVVFVPLKAGVIELGSMEGVPEDLGFLDMVKTTFGESTSGPAKAAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAFGNSSNGGVGDSNDAKIFPQLSQMVPGNFTSQARVSSIELGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKSMVNNKGHQLSLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIAAQEANVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLAKN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03656 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Tsu07g03656 503 CDD ACT_UUR-ACR-like 451 500 - -
Tsu07g03656 503 PANTHER TRANSCRIPTION FACTOR BHLH3 3 502 - -
Tsu07g03656 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Tsu07g03656 503 PANTHER MYC 3 502 IPR045084 GO:0003700|GO:0006355
Tsu07g03656 503 CDD bHLH_AtAIB_like 348 411 - -
Tsu07g03656 503 Coils Coil 397 417 - -
Tsu07g03656 503 Gene3D - 344 417 IPR036638 GO:0046983
Tsu07g03656 503 MobiDBLite consensus disorder prediction 322 362 - -
Tsu07g03656 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Tsu07g03656 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 423 IPR036638 GO:0046983
Tsu07g03656 503 MobiDBLite consensus disorder prediction 330 362 - -
Tsu07g03656 503 SMART finulus 357 406 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03656 Tsu-Chr7 42781259 42783702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03656 4 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.525 1.58e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g03656 bHLH-MYC_N 3.5e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03656 - - gmx:100819968 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03656 07 42781259 42783702 Tsu07g03656 07 42781259 42783702 ECH