Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03652 ATGGCTTCTGAAGATCCCACCGTCACCATCGAAGAAACCGCCACCGTCGAAGAAACCGCTGATGTCGACACTTTACCTCCCGTCGTCAATGAGTCTGATGAACCCGCCGCTGATGATACCACCACTGCCGCCGCCGCCGCCGCCAAACCTAAGAAGGCTGCCAAGGAGCCTAAGCCAAGGAAGCCAGCTGCTAAGAACGCTCGCACTCATCCTTCTTACGAAGAGATGGTGAAGGACGCGATTGTTACGTTGAAGGAGAAAAGCGGTTCGAGTCAGTATGCGATTGCGAAGTTCATTGAAGAGAAGCATAATCAGTTACCATCGAATTTCAAGAAGATTTTGCTTGTTCAGATCAAGAAGCTTGTTGCTTCTGATAAGCTTGTTAAGGTGAAAGGATCTTACAAATTACCACCTAAGTCGTCTGCTGCTAAACCAGCTGTTGCTGCTAAGCCTAAGTCAAAGCCCGCTGCTGCTAAGCCCAAGCCTAAGCCCAAGAAACCAACACCTAGGGCTTCTGCTCCTGTTAGTACTAAGAAAGCTAAACCTACAGCTGCTAAGAAAGCTAAGCCAGTAACCAAAGCTAAGCCAGCTGCTAAGGCTAAGCCGGCTGTTGTCAAACGTAAGCCGGCTATTGTGAGTCCTGCACCTCAGCCGATAGTGTCGTCAAAGCGTAAGGCTAGACCTGCTCCTAAGGCGAAGCCAGTAGCTAAGGCGAAACCGGCTGCTGCTAAGGCAAAACCGGCTCCTGCTAAGGCGAAGCCTGCTGTGGCGAAGAAGCCTGCTGCCAAGCCGGCGAAGGCTTCTCGGACTTCAACCAGGACATCTCCTGGGAGAAGAGCTGCTGCGCCAAAGCCTGCTGTGGCGAAGAAGGTTGCCACACCGGTGAAGAAGGCTGCTCCGGTGAAGAAGGTGGTGGGGAAGGCAAAATCGCCAGCGAAGAAGGCAGCTCCGGCGAAGAGAGGAGGTAGAAAGTGA 975 0.5262 MASEDPTVTIEETATVEETADVDTLPPVVNESDEPAADDTTTAAAAAAKPKKAAKEPKPRKPAAKNARTHPSYEEMVKDAIVTLKEKSGSSQYAIAKFIEEKHNQLPSNFKKILLVQIKKLVASDKLVKVKGSYKLPPKSSAAKPAVAAKPKSKPAAAKPKPKPKKPTPRASAPVSTKKAKPTAAKKAKPVTKAKPAAKAKPAVVKRKPAIVSPAPQPIVSSKRKARPAPKAKPVAKAKPAAAKAKPAPAKAKPAVAKKPAAKPAKASRTSTRTSPGRRAAAPKPAVAKKVATPVKKAAPVKKVVGKAKSPAKKAAPAKRGGRK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03652 324 MobiDBLite consensus disorder prediction 307 324 - -
Tsu07g03652 324 MobiDBLite consensus disorder prediction 1 75 - -
Tsu07g03652 324 PANTHER HISTONE H1.1 14 210 - -
Tsu07g03652 324 PANTHER HISTONE H1.1 218 323 - -
Tsu07g03652 324 CDD H15 67 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g03652 324 MobiDBLite consensus disorder prediction 129 324 - -
Tsu07g03652 324 MobiDBLite consensus disorder prediction 51 75 - -
Tsu07g03652 324 SUPERFAMILY "Winged helix" DNA-binding domain 67 150 IPR036390 -
Tsu07g03652 324 Pfam linker histone H1 and H5 family 70 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g03652 324 PANTHER HISTONE H1 218 323 - -
Tsu07g03652 324 PANTHER HISTONE H1 14 210 - -
Tsu07g03652 324 SMART h15plus2 67 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g03652 324 PRINTS Histone H5 signature 56 77 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu07g03652 324 PRINTS Histone H5 signature 83 100 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu07g03652 324 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu07g03652 324 PRINTS Histone H5 signature 189 206 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu07g03652 324 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 69 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g03652 324 Gene3D - 64 148 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03652 Tsu-Chr7 42744349 42745684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03652 31 163 Single Myb Histone (SMH) Gene Family AT1G49950 30.147 1.78e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03652 K11275 - pop:7479991 116.701