Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03648 ATGTCTAATGATGTTGCAAAAATCAATAGAGAAGCGATTGCAGCATGCATGACTTGCCCACTTTGTAACAAATTCTTCAAACAAGCTACAACTATATCTGAATGTCTTCATACGTTTTGTAGGAAGTGCATTTATGACAAAATTACTGATGAAGATTTGGAATGCTGTCCAGTATGTAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCCGGACCACAGTAAGCTAAACATAAGGTACATAGTTTTCCCTTCAAAGCGAAGAGAGGTGAAAGAACCTGAAGTTGTCGCCGCCTCAGTAGAGCCGGTACCATTGCCAGctaaaagaaaagagagatcTCTTTCATCCTTGGTGGTCAACACACCAAGAGTATCTGCACAATCATCCCTGACAGGAAGAAGAACGAAACCTACAAGAAAAGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCattgaaaaatcaattaaacaagAGGAAGAGTTATTGAATAACCGTCCCGAGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTGCGTCAAAATAATGGACAGAGTGATGGCAGCCGATCCCCACCAAATAAAGAAGCAGAGAACGGTGTCGAATCATGGGATGCAAAGATGGATCTTTGGAAGCCTTTGAATGATTTAGTAGAGATCGCAAGCAGGACTAAATCTTTCAAGTCTAATACGCAACGGTCTGATACCAAACCAGAACATGTTCAAGTAGACGAGAGTGACTCTCTAGTGCAGAAAAtcaaaaataaggaaaataaaCGCAAGGCAAAAGTTGAGGATGAAAAGAGTAGCCCTTTTCCAGTTTGCTCGGATACagcaaaaccaaataaattgCGCAGAGTACGCAAGAAAAAGGAACCATTTGGAGAATCAGGCATATCTCCCCAAGCTGTGGTGGATTCTACCAGCAATAAGCACTTTAAGAGTGGTCCAATTTGGTTCTCCTTAGTAGCTACTGAAAACCAGGAAGGAGAAGCACCCTTGCCAAATATTCCTGCACTATATTTGAGAGTAAAGAATGGAAGTGCAACTGTCTCGTATATCCAAAAATACCTAATGCAGAAATTCAATCTGACCAGTGAAACCGAGGTTGAGATTAAGTGTATGGGTCAACCAGTACTCCCTACACTGGAACTACATAATTTGGTTGAGTTGTGGCTGGAATCAGCATCATCTGCATCAGACCGAATTCCAGCAATTATCGGGTCCTCAGCAAAGGATTTTGTCATGGTTCTCGCTTATTCTCGGAAGGCTCCACATCCTTGA 1287 0.4017 MSNDVAKINREAIAACMTCPLCNKFFKQATTISECLHTFCRKCIYDKITDEDLECCPVCNIDLGCVPLEKLRPDHSKLNIRYIVFPSKRREVKEPEVVAASVEPVPLPAKRKERSLSSLVVNTPRVSAQSSLTGRRTKPTRKASSLRSSSFSIEKSIKQEEELLNNRPESSSSPETSNKLRQNNGQSDGSRSPPNKEAENGVESWDAKMDLWKPLNDLVEIASRTKSFKSNTQRSDTKPEHVQVDESDSLVQKIKNKENKRKAKVEDEKSSPFPVCSDTAKPNKLRRVRKKKEPFGESGISPQAVVDSTSNKHFKSGPIWFSLVATENQEGEAPLPNIPALYLRVKNGSATVSYIQKYLMQKFNLTSETEVEIKCMGQPVLPTLELHNLVELWLESASSASDRIPAIIGSSAKDFVMVLAYSRKAPHP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03648 428 MobiDBLite consensus disorder prediction 126 153 - -
Tsu07g03648 428 MobiDBLite consensus disorder prediction 126 202 - -
Tsu07g03648 428 MobiDBLite consensus disorder prediction 228 280 - -
Tsu07g03648 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 424 IPR044807 GO:0004842
Tsu07g03648 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Tsu07g03648 428 Gene3D - 300 396 - -
Tsu07g03648 428 MobiDBLite consensus disorder prediction 166 194 - -
Tsu07g03648 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 424 - -
Tsu07g03648 428 SUPERFAMILY RING/U-box 14 75 - -
Tsu07g03648 428 SMART ring_2 19 59 IPR001841 -
Tsu07g03648 428 MobiDBLite consensus disorder prediction 231 271 - -
Tsu07g03648 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Tsu07g03648 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 105 IPR013083 -
Tsu07g03648 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03648 Tsu-Chr7 42700763 42705356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03648 1 346 C3H Transcription Factor Family AT2G30580 48.864 2.94e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03648 K16277 - gmx:100815540 605.134