Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03640 ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGGTTAGGATTACCTGGAAGTGAAGATAATCAACAATCATGCAATGGTTCTATTGTTAGAAGTAACAAGAGATCTTTTTCATCAGAAACAACAAGTGTGGAACATGAATCCATTTGTAAGAGCAACAATGTTAGCTCAGATACTTCGAATTCTTCAACCACAAATAATGATCACGATCATGACCAAGATACCATCCAACCTAAAAAGGTACAAGTAGTAGGGTGGCCACCAATTAGATCATTTAGGAAGAACAGTTTACAGCAAAAGAAAGTGGAAGATGGATGTGGAATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTGAGGAAGATAGATCTCAAAGTATACAAAAGCTATTCAGAACTTCTTATAGCTTTGGAAAATTTGTTCAAGTGCACATTTGGTAAGTACTATGCAGGAACAAATAATTATCAATTGgtcaattttgataattttttagtatcattgttaattttttgttga 540 0.3222 MGSYIETELIINHKDTELRLGLPGSEDNQQSCNGSIVRSNKRSFSSETTSVEHESICKSNNVSSDTSNSSTTNNDHDHDQDTIQPKKVQVVGWPPIRSFRKNSLQQKKVEDGCGMYVKVSMAGAPYLRKIDLKVYKSYSELLIALENLFKCTFGKYYAGTNNYQLVNFDNFLVSLLIFC 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03640 179 Pfam AUX/IAA family 16 157 IPR033389 -
Tsu07g03640 179 SUPERFAMILY CAD & PB1 domains 109 157 - -
Tsu07g03640 179 MobiDBLite consensus disorder prediction 21 83 - -
Tsu07g03640 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 158 IPR003311 GO:0005634|GO:0006355
Tsu07g03640 179 Gene3D - 109 172 - -
Tsu07g03640 179 ProSiteProfiles PB1 domain profile. 114 179 IPR000270 GO:0005515
Tsu07g03640 179 MobiDBLite consensus disorder prediction 23 71 - -
Tsu07g03640 179 PANTHER AUXIN-INDUCED PROTEIN 10 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03640 Tsu-Chr7 42620477 42621919 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu07g03640 AUX_IAA 2.7e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03640 K14484 - gmx:100792134 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03640 07 42620477 42621919 Tsu07g03640 07 42620477 42621919 ECH
Tsu07g03640 07 42620477 42621919 Tsu01g02656 01 29931387 29935665 PCT