LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g03621	ATGAACTATTTGTATCCGGTGAAAGAAGAGTATTTAGAAATTGAATCAATAGCGTCGGCATCAGCGACATATGAAAGAGGAAGTGATGAGGGATCAATGGTTGTTATTCCACGGCCAATGGAGGGGCTACATGAAGTAGGACCACCACCATTTCTAACAAAGACATATGATGTTGTGGAGGACCCCACAACAAGTAACATAGTTTCATGGAACAGAGATGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCAAGAGATCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTCGTTAGACAACTCAACACTTATgGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTTTGAGAGGACATAAACATCTTTTGTCAAACATTAAGAGAAGGAGACAAAATTCATCACAACCGAGTACTTCACAAACACATTCACAAGGTCATTGTGTTGAACTTGGTCGTTTTGGATTAGATGAAGAAATTGATCATTTGAGACGTGATAAACAGGTGTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAACACAAGATCTTTACTTCAAGCAATGGAAGAAAGATTGCGCGGAACAGAAATTAAGCAGGAACAAATGATGGCTTTTTTAGCTAGAGCTATGAAGAATCCAGCTTTTATTCAGCAATTACTTCAACATAAGGAAAAGAGAAAGGAGATTGAAGAAGCTATTACTAAGAAGAGGAGAAGGCCTATTGAGTATGGAGAATCAAGCAATGATGTTAAATTTGGATTTGAAGTGTCTGAGTTGGAGGTTCTTGCTATGGAAATGCAGGGTCTTGGAAGAGGTAAGAGAGAACTTGAGGAAGAGATTGATGTGTTTGAGACTAATGAGAAATTTAATAAAGAACTTGATGAAGAGTTTTGGGAAGAACTTTTTAGTGAgaaatttgagaatgaattaGATATTCTAACTTCTCaaggagatgatgatgatgatgttgatggtGAAGATCATGTCAATGTGTTGGCTAATCGCTTTGGTTACTTGGGTTCTAGTCCTAAATGA	1074	0.3557	MNYLYPVKEEYLEIESIASASATYERGSDEGSMVVIPRPMEGLHEVGPPPFLTKTYDVVEDPTTSNIVSWNRDGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLSNIKRRRQNSSQPSTSQTHSQGHCVELGRFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSLLQAMEERLRGTEIKQEQMMAFLARAMKNPAFIQQLLQHKEKRKEIEEAITKKRRRPIEYGESSNDVKFGFEVSELEVLAMEMQGLGRGKRELEEEIDVFETNEKFNKELDEEFWEELFSEKFENELDILTSQGDDDDDVDGEDHVNVLANRFGYLGSSPK	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g03621	357	Coils	Coil	272	292	-	-
	Tsu07g03621	357	SMART	hsfneu3	47	140	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	Coils	Coil	232	252	-	-
	Tsu07g03621	357	Coils	Coil	170	204	-	-
	Tsu07g03621	357	Pfam	HSF-type DNA-binding	51	140	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	20	341	IPR027725	-
	Tsu07g03621	357	PRINTS	Heat shock factor (HSF) domain signature	102	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	PRINTS	Heat shock factor (HSF) domain signature	51	74	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	PRINTS	Heat shock factor (HSF) domain signature	89	101	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	20	341	-	-
	Tsu07g03621	357	SUPERFAMILY	"Winged helix" DNA-binding domain	47	140	IPR036390	-
	Tsu07g03621	357	ProSitePatterns	HSF-type DNA-binding domain signature.	90	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Tsu07g03621	357	Gene3D	-	44	141	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g03621	Tsu-Chr7	42436461	42439568	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g03621	25	355	HSF	AT3G22830	51.451	1.62e-120	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Tsu07g03621		HSF_DNA-bind	1.1e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g03621	K09419		-	gmx:100811798	509.605