Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03617 ATGATTGACATTGTTGTTTTATATGAAAATCATGTTGAGTTGAGGGTTCAATGTATGGTTTCTGTTGTGGTATCATTTTGTgttggtttgtttttttgttatgtggGGTATTGTGTGAAAAATGAAGGTGATAGAACTCTTCAAGAGCCTCTTTTGAATAGTAATGGTAATGCTTTAGAGTTAGAAGAGACTAAAGGGAGTGACACTATTACTCCTTATTCAAATGCTGGAATTTTGAGCCTTCTTACCTTATCTTGGGTGAGTCCACTTATAGCATTTGGGAATAAGAAGACCTTAGACCTTGAGGATGTTCCTCAGTTAGATAGTGGAGATAGTGCTGCTGGAGCTTTTCCAATTTTTAGAGACAAAGTTGAAGCTGATTGTGGTGCAATCAATAGAGTAACCACACTTAAGTTGGTTAAGTTATTGATAATCTTATGTTGGAAAGAGATTCTTATAACTGGTTTGCTTGCACTGATAAACACTTGTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTGGTGGAAAAAGGCTATATGAGAATCAAGGCTATGCTTTGGTTTCTGCCTTTATATTTTCACAGCTTGTAAAATGCTTATCACAAAAGCATTGGTACTTTAAGTTGAAGCAACTCGGAGTTCGAATTCGAGCATTGCTTGTGACTATGATATATGAAAAAGCCTTAACACTTTCATGCCAATCAAGGCAGTGTCACACTTCTGGTGAAATAACCAATTTCATTACCGTTGATGTCGAAAGAGTTGGTTATTTCACTTGGTACATGCATGATTGGTGGATAATAGTTTTGGAAGTTACATTGGCATTgttgattttgtataaaaacCTTGGACTTGCTTCCGTTGTTACTCTTGTTACAACCATCATTGTTATGTTGGCAAATGTTCCAATTGGATCATTGCAAGGGaagtttcaaaagaaaatgatgGAGTCAAAGGATACTAGAATGAAGAGCACATCTGAAACTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTTTATCTAAAATAATTGAGCTCAGGGATGCGGAACAAGGCTGGttgaaaaaatttctttatacTTCAGCTATGactaaatttttctattatgGTGCATCTACAATTATATCTGTGGTTACTTTTGGTACTTGTATGCTCATAGGGATCCCACTTGAATCCGGGAAGATTCTGTCAGCATTGGCAACATTCAGGATTCTTCAAGGGCCTATTTATAGTCTTCCAGATTTAATTTCAATGATAGCAAAAACTAAAGTTTCTCTTTATAGGATCGTGTCGTTCCTTCGTCTTGATGACTTGCAGTTTGATGTTGTTGAAAAGCTTCCTCCCGGTAGTTCTGATACTGCAATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCACCTAATCCAACTTTGCGGAACATAAACCTCAAAGTTTTTCATGGCATGAAGGTTGCTGTTTGCGGTACAGTTGGATCGGGAAAGTCTACGTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACAAATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCCTGAAGAAGGATATGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGAATTAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTTTACCGAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTGCTGGGTGTTTTAAGTTCAAAAACAGTGGTTTATGTTACTCATCAAGTGGAGTTTTTACCTACTGCTGACCTTATATTAGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGAGCTTCTTAACATTGGAACCGATTTTATGGAACTTGTTGGGGCACACATAGAAGCTTTGTCTACACTTGAATCATTGGATGGAGGAAAAGCCTCTAATGAAATAAGTACATTAGAACAAGAAGTAAATATCTCTGGCACTCATGAAGAGGCAAACAAAGAAGTGCAAAATGGTCAAGCAGATGATAAAGGCGAACCGGAAGGCCAAATTgttcaagaagaagaaagggaGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCATACAGAGGAGCTTTCGTACCGTTCATATTATTGGCTCAGATTctttttcaagttcttcaaatTGGAAGCAACTATTGGATGGTGTGGGAAACTCCCGTCTCAGCAGATGTGAAGCCACCTGTTGAAGGAATGACTTTTATCGAAGTCTATGTTGTTTTGGCCATTGGAAGTTGTTTATGCATTCTTGTTATAGAATTGTTACTTGTTACAGCTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATCTTTCGCGCCCCCATGTCATTTTTCGATTCGACTCCTAGTGGACGAATCCTGAATAGAGCTTCTACTGACCAAAGTGCTGTGGATACCGACATTCCTTATCAAATTGGCACATTTTCCTTTCATGTGATCATGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTTATTGTCTTTGTACCTGTGATAGCACTCAGCATTTGGTATCAGCAATATTATTTACCATCAGGCCGTGAACTGTCACGTTTAGTTGGAGTATCCAGAGCCCCAATCATTCAACACTTTGCGGAAACAATTTCCGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCAAGGTTTCTTGAAACAAATATGAAACTGGTTGATGGGTATTCTCGACCAAAGTTCAACATGTCTGTTGCTACCGAATGGTTAGGTCTCCGCTTAGATATGTTGTCTTCCATCACATTTGCATTTTCCTTGATATTCTTGATATCGATTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCTGTTACCTATGGTCTAAGTATAAACGCGATACAATATATGGTGATATTTTGTCTTTGCAACTTGGAGAACAATATTATATCGGTAGAAAGGATACTTCAACATACAACCATTCCTAGTGAGCCTCCCCTTGtttcagaagaagaaaataggCCAGATCTTTCTTGGCCCGCATATGGCAAGGTTGATATACGGAACTTGCAGGTTCGATATGCTCCACATCTTCCACTCGTGTTGCATGGCCTAACATGCACATTTCATGGAGGATTAAAAACTGGCGTTGTTGGTAGAACAGGTAGTGGAAAATCAACTCTTATGCAAACACTTTTCCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATTGACCGTATCAACATCTCTACAATCGGACTGCATGATTTGAGGTCTCGACTAAGCATTATTCCGCAAGATCCAACAATGTTTGAGGGGACAGTGAGAAGTAATCTGGACCCCCTTGAAGAGTACACTGATGCACAAATATGGGAGGTGTgtttgtgttcttttatttCTAATGTGGAAGTTGATGCTTTTATAGTTAGTGAAAATGGTGAGAATTGGAGCATGGGTCAGAGACAGTTGGTTTGCCTAGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTACTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACGGACTCTACCGTCATTACTATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACATTGCTTGAGGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGAACAGGCAAACAGCTGCTGTAGTTGCGTGGATATTGTGGAATAATCGAAACAATTGGGTCTGGAACAGCGTTAAGGAGTCAGAAAACGTGTTAGCCACGTGTGCCATGCATATGGTGGACGAATGGTGTGCAATGAATGTGCTGCTGCAGCAAAACATCGCCTCTGGTACTGTACTTACAGTCACACAGTGGCAGCAGCTGCGAGACGGGTGGTTGAAATGCAATGTAGATGCGCGTTTTTATGAAGATTTAGGCCATATGGGAGGAGACCGGTGTGTATGGATGCACGAGGAAGATGTTGAGGAAGATGATTGGCATGTTTTCTTTGGGTGTGAAGAGAGTAGAGAAGTGTGGAATGAAGTTGGCCTTCGGATTGTTATTGACTCACGAAATCAGTTTGCAGACACCATGCAATCTGTGTTCTTTGGAGTCAGCAAAGGTGTTTGCCACGCGTGCCGTGAATATGGTGGGCGAATGCTGTGCACTGAATGTGCTGCAGCAGCAAAACATCTCCTCTGGTTTGTTCCAGCTGGTACTAATTTGATTCGCCAAAACCTTGCAACAATTAAAGGTGAAGCCATGGTAATCCTAGATGTGTTACGTGAAGCTATTGCAAGAGATTGGACCAACATTGTGCTCGAGAGTGATTTCAAAATAGTGGTGGATGCGATTCATGCAAATCATAATGAAGTCTCTGAATTTTGTTCGTTTATTTTCTCAATTAAGTTGTTGTTACAACGTAAGTCGAGTTTTGAGGTAAAGTTCATCAATCGACAAACAAACATGGTAGGTCACACTTTAGCTAGAGTGGTCATTTCTTGA 4803 0.3862 MIDIVVLYENHVELRVQCMVSVVVSFCVGLFFCYVGYCVKNEGDRTLQEPLLNSNGNALELEETKGSDTITPYSNAGILSLLTLSWVSPLIAFGNKKTLDLEDVPQLDSGDSAAGAFPIFRDKVEADCGAINRVTTLKLVKLLIILCWKEILITGLLALINTCASYVGPYLIDSFVQYLGGKRLYENQGYALVSAFIFSQLVKCLSQKHWYFKLKQLGVRIRALLVTMIYEKALTLSCQSRQCHTSGEITNFITVDVERVGYFTWYMHDWWIIVLEVTLALLILYKNLGLASVVTLVTTIIVMLANVPIGSLQGKFQKKMMESKDTRMKSTSETLRNMRILKLQGWEMKFLSKIIELRDAEQGWLKKFLYTSAMTKFFYYGASTIISVVTFGTCMLIGIPLESGKILSALATFRILQGPIYSLPDLISMIAKTKVSLYRIVSFLRLDDLQFDVVEKLPPGSSDTAIEVVDGNFSWDLSSPNPTLRNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGEQMVRERYEKVLEACSLKKDMEILSFGDQTVIGERGINLSGGQKQRIQIARALYRDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYAELLNIGTDFMELVGAHIEALSTLESLDGGKASNEISTLEQEVNISGTHEEANKEVQNGQADDKGEPEGQIVQEEEREKGKVGFSVYWKYITTAYRGAFVPFILLAQILFQVLQIGSNYWMVWETPVSADVKPPVEGMTFIEVYVVLAIGSCLCILVIELLLVTAGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGTFSFHVIMLLGIIAVMSQVAWQVFIVFVPVIALSIWYQQYYLPSGRELSRLVGVSRAPIIQHFAETISGTSTIRSFDQQSRFLETNMKLVDGYSRPKFNMSVATEWLGLRLDMLSSITFAFSLIFLISIPPGIINPGIAGLAVTYGLSINAIQYMVIFCLCNLENNIISVERILQHTTIPSEPPLVSEEENRPDLSWPAYGKVDIRNLQVRYAPHLPLVLHGLTCTFHGGLKTGVVGRTGSGKSTLMQTLFRLVEPTAGEVIIDRINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDAQIWEVCLCSFISNVEVDAFIVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLEDKSSSFAKLVAEYTMRNRQTAAVVAWILWNNRNNWVWNSVKESENVLATCAMHMVDEWCAMNVLLQQNIASGTVLTVTQWQQLRDGWLKCNVDARFYEDLGHMGGDRCVWMHEEDVEEDDWHVFFGCEESREVWNEVGLRIVIDSRNQFADTMQSVFFGVSKGVCHACREYGGRMLCTECAAAAKHLLWFVPAGTNLIRQNLATIKGEAMVILDVLREAIARDWTNIVLESDFKIVVDAIHANHNEVSEFCSFIFSIKLLLQRKSSFEVKFINRQTNMVGHTLARVVIS 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03617 1600 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 152 432 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03617 1600 SMART AAA_5 493 666 IPR003593 -
Tsu07g03617 1600 SMART AAA_5 1119 1306 IPR003593 -
Tsu07g03617 1600 Pfam ABC transporter 1110 1253 IPR003439 GO:0005524
Tsu07g03617 1600 ProSitePatterns ABC transporters family signature. 591 605 IPR017871 GO:0005524
Tsu07g03617 1600 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1329 - -
Tsu07g03617 1600 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1095 1322 IPR003439 GO:0005524
Tsu07g03617 1600 Pfam ABC transporter transmembrane region 152 419 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03617 1600 Pfam ABC transporter transmembrane region 779 1017 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03617 1600 CDD ABC_6TM_ABCC_D1 153 440 IPR044746 GO:0140359
Tsu07g03617 1600 Gene3D - 1075 1324 IPR027417 -
Tsu07g03617 1600 SUPERFAMILY ABC transporter transmembrane region 145 445 IPR036640 GO:0005524|GO:0016021
Tsu07g03617 1600 Gene3D - 454 699 IPR027417 -
Tsu07g03617 1600 CDD ABCC_MRP_domain2 1091 1306 - -
Tsu07g03617 1600 Pfam ABC transporter 484 618 IPR003439 GO:0005524
Tsu07g03617 1600 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 5 1329 - -
Tsu07g03617 1600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 688 IPR027417 -
Tsu07g03617 1600 Gene3D ABC transporter type 1, transmembrane domain 736 1072 IPR036640 GO:0005524|GO:0016021
Tsu07g03617 1600 Gene3D ABC transporter type 1, transmembrane domain 132 448 IPR036640 GO:0005524|GO:0016021
Tsu07g03617 1600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1085 1317 IPR027417 -
Tsu07g03617 1600 SUPERFAMILY ABC transporter transmembrane region 773 1073 IPR036640 GO:0005524|GO:0016021
Tsu07g03617 1600 CDD RNase_H_like 1519 1596 IPR044730 -
Tsu07g03617 1600 CDD ABCC_MRP_domain1 466 666 - -
Tsu07g03617 1600 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 689 IPR003439 GO:0005524
Tsu07g03617 1600 CDD ABC_6TM_ABCC_D2 773 1065 IPR044726 GO:0140359
Tsu07g03617 1600 Pfam Reverse transcriptase-like 1516 1596 IPR002156 GO:0003676|GO:0004523
Tsu07g03617 1600 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 816 1055 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03617 Tsu-Chr7 42335656 42344256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03617 466 711 Calmodulin-binding Proteins AT2G36910 30.258 7.50e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03617 - K05666 gmx:100777836 2075.83