Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03614 ATGGAGCAGTATGAAATTCTAGAACAGGTTGGTAAAGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCACAAGcatgaaaagaaaaaGTATGTCCTCAAGAAGATCCGTCTTGCACGCCAAACTGATAGAACCCGTAGGTCGGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGCAACCCATTTATTGTGGAGTATAAAGATTCTTGGGTAGAAAAGGGTTGTTTTGTATGTATTATCATCGGCTATTGTGAAGGAGGGGATATGGCTGAAACTATAAAAAAGGCCAATAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTTGTCCAGTTGCTAATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGTGATGTCAAGTGCTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGACGATCTTGCTTCCTCAATTGTTGGTACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCCTATGGCTCCAAATCAGATATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCCGCTCACAGGCCAGCTTTTAAAGCTTTTGACATACAATCATTGATTCACAAAATAAACAAGTCTATAGTATCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCCGGAGAGTTACTAAATCATCCACATCTTCAGCCTTACATTCTTAAAGTTCACCAAAAACTAAATAGCCCCAGCAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAactatgcaagaagaactcgATTTGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGACAGATACTTGTCGTCACTAAACAATCACAGAGCGTTGAATCCCAGTATTTCTGGAACTGAACAAAGTTCTCAATATTCTATTCAAAGAGCTCAAGGATTATCCAACTGTTCAGAAGAGAAGATCTATGACTTATCTGCTGGTGTTGTCCGTAACAAATCAAAAGCCAAAAATTCCTCAACTGGGGAAAGAACACCAAGACTTAGAGTAGCTAAGGAATCTGCTTCTGCCAGAAGGCAGACAACAGCACCGCCAAAGATACATGTTACTGCTTCAAAGCGTGAATCACTTCCAGTACCCCGTGCACCATCTGGTAAATCTTCCACGCCAACTCGGAGAGCATCCCTTCCGATTCCTACAAGAGGCAGGAACAAAACAAACTTCTACACTGATGTTGGTTATGTGGATTCTCCTGATGTTTCTGTTGATGCACCACAAATTGACAGGATTGCAGAATTCGCAATGGCTTCCTATGAGGATCCATTCTTCCATGTTATTCGCAGATCATCGTCAACATCAGCCAAATGTTTTTCTAGCACAGCAGGAAGTGCTGATTGCACAATCACAAAGGACAAGTGTACAATCTTGGTGGACAAGAAAGTTACTGTCCCTACTAGCACCGTTGAAGCTGGTACTGGTGTTCCATTTACAAAAGGCAGTGCCAGTGAATGCTCTAACTATGTTACAGCTGGCATTTCAAGCCGCTCCTCGTCTGAGTCGCACGGGCATCGGTTTGACACCTCGTCATACCAGCAACGCGCTGATGCATTGGAGGGGCTGCTGGAGTTCAGTGCTAGATTACTACAACAACGCAGGTTTGATGAGCTTGGTGTATTGCTGAAGCCGTTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACTGTGATCTAACGTTTCCTCATACACTTACGTGA 1857 0.4227 MEQYEILEQVGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAETIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQSLIHKINKSIVSPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYILKVHQKLNSPSRSTFPFQWPESNYARRTRFVEPESVSTLSDQDRYLSSLNNHRALNPSISGTEQSSQYSIQRAQGLSNCSEEKIYDLSAGVVRNKSKAKNSSTGERTPRLRVAKESASARRQTTAPPKIHVTASKRESLPVPRAPSGKSSTPTRRASLPIPTRGRNKTNFYTDVGYVDSPDVSVDAPQIDRIAEFAMASYEDPFFHVIRRSSSTSAKCFSSTAGSADCTITKDKCTILVDKKVTVPTSTVEAGTGVPFTKGSASECSNYVTAGISSRSSSESHGHRFDTSSYQQRADALEGLLEFSARLLQQRRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQNCDLTFPHTLT 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03614 618 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03614 618 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tsu07g03614 618 MobiDBLite consensus disorder prediction 361 378 - -
Tsu07g03614 618 CDD STKc_Nek 3 258 - -
Tsu07g03614 618 MobiDBLite consensus disorder prediction 406 426 - -
Tsu07g03614 618 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tsu07g03614 618 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 599 - -
Tsu07g03614 618 SUPERFAMILY Protein kinase-like (PK-like) 1 322 IPR011009 -
Tsu07g03614 618 Gene3D Transferase(Phosphotransferase) domain 1 86 338 - -
Tsu07g03614 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu07g03614 618 MobiDBLite consensus disorder prediction 356 426 - -
Tsu07g03614 618 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03614 618 PANTHER SERINE/THREONINE-KINASE NEK4 1 599 - -
Tsu07g03614 618 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03614 Tsu-Chr7 42316378 42321139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03614 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 1.36e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu07g03614 Pkinase 7.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03614 K08857 - gmx:100792678 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03614 07 42316378 42321139 Tsu07g03614 07 42316378 42321139 ECH
Tsu07g03614 07 42316378 42321139 Tsu01g02802 01 33380970 33384103 PCT