Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03575 atgcTCATTCTTGCGTTCTTTTGCTCAAATTCTTTCGTAAAAAATATCAATGCTTTTGCAGAGGATATTGTTGATGTTATAGTGGATTGTGGTGCTGTTCCTGCTTTGGTGAAGGTTCTGGAGACGGCGAGCTTGGTGGTGAGTGATGACGGTGATTGTCACCTGGATCGTCACCGGTATGAAATGGAGAAAGATTGTGCGTTTGTCCTTGGTTTACTCGCTGTTAAgTCAGAGTATCAACAACTCATTGTTGATGCTGGAGCCTTGCCCCATCTTGTAGGATTGTTAAAGAGATCCAAAAGCCCTATAATTTCTCAAGCACTTTTTTCGGGTCTTCTTAGGAAAGCAGCTGACACAATTACCAACCTTGCTCATGAAAATACCAGCATCAAGACCCTTGTCAGGGTGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATACAAAGGTACAGAGAGCAGCTGCTGGTGCATTGCGAACTCTTGCATTTCAAAATgctgaaaataaaaatcagATTGTTCAATGCAATGCGTTGCCCACTCTTGTACTGATGCTTGGATCAGAGGATCCTACAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCACCTGAAATTAAGAAAGAGGTTCTTCTAGCCGGGGCTTTACAGCCAGTTATTTGCTTACTAAGTTCCTGCTGTTTGGAGAGCCAACGAGAAGCAGCTCTTTTAATTGGTCAATTTGCTACAACGGATTCAGATTGCAAGATTCATATTTCCCAGAGAGGGGCTATAAACCCCTTAATTGACATGCTTGAGTCTTCAGATTTACAGCttagggaaatgtcaacttttgCACTTGGGAGGTTGGCCCAGGACTCACACAATCAAGCTGGTATCGCTTACAGTGGAGGTATAGAGCCTCTGCTCAAGCTTCTTGGCACAAAGAATGCTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCTTGCGGATAATGAGGACAATGTTCCAGTTATTATTAAGGCTGGTGGTTTTCAAAAACTGCATGAGGGACATTTTAATGCTCAACCCACTCAAGAGTGTGTAACAAAGACATTAAAAAGATTGGCAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATCTTATGCGCACTGGGGAAAAGGGTGTTCAAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAACTATTTTCATTGACAATAATGGATTGGAATTGCTGTTAG 1278 0.4108 MLILAFFCSNSFVKNINAFAEDIVDVIVDCGAVPALVKVLETASLVVSDDGDCHLDRHRYEMEKDCAFVLGLLAVKSEYQQLIVDAGALPHLVGLLKRSKSPIISQALFSGLLRKAADTITNLAHENTSIKTLVRVEGGIPPLVELLEFNDTKVQRAAAGALRTLAFQNAENKNQIVQCNALPTLVLMLGSEDPTIHYEAVGVIGNLVHSSPEIKKEVLLAGALQPVICLLSSCCLESQREAALLIGQFATTDSDCKIHISQRGAINPLIDMLESSDLQLREMSTFALGRLAQDSHNQAGIAYSGGIEPLLKLLGTKNASVQHNASFALYALADNEDNVPVIIKAGGFQKLHEGHFNAQPTQECVTKTLKRLAEKMQGRVLKHMLYLMRTGEKGVQIRVVLALAHLCSPDDRKLFSLTIMDWNCC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03575 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 347 IPR000225 GO:0005515
Tsu07g03575 425 Gene3D - 7 295 IPR011989 -
Tsu07g03575 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 173 IPR000225 GO:0005515
Tsu07g03575 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 87 138 IPR000225 GO:0005515
Tsu07g03575 425 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 16 414 - -
Tsu07g03575 425 SUPERFAMILY ARM repeat 19 353 IPR016024 -
Tsu07g03575 425 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 16 414 IPR044282 -
Tsu07g03575 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 264 306 IPR000225 GO:0005515
Tsu07g03575 425 Pfam Armadillo/beta-catenin-like repeat 132 166 IPR000225 GO:0005515
Tsu07g03575 425 Pfam Armadillo/beta-catenin-like repeat 77 124 IPR000225 GO:0005515
Tsu07g03575 425 Pfam Armadillo/beta-catenin-like repeat 169 208 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 76 125 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 211 251 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 253 293 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 169 209 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 294 334 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 127 167 IPR000225 GO:0005515
Tsu07g03575 425 SMART arm_5 20 75 IPR000225 GO:0005515
Tsu07g03575 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 222 IPR000225 GO:0005515
Tsu07g03575 425 Gene3D - 296 417 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03575 Tsu-Chr7 41932459 41935269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03575 224 360 U-box Gene Family AT1G23030 24.088 2.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03575 - - csin:114287792 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03575 07 41932459 41935269 Tsu07g03575 07 41932459 41935269 ECH