Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03558 ATGTCGAGGATATGTGTGAAGAATCTCCCTAAATATGTTGCAGAGGATCGACTAAGAGAGTTATTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTAAGCGTACCAAAAACGGCAAAAGTCGCCAATTTGCTTTTATTGGATTTCGTACAGACCAGGAAGCTCAGGAAGCGATTCGATATTTTAATAGATCTTACCTTGACACGCTTAGAATTATTTGCGAGGTGGCTCAAAAACGCGGTGATGCAAATCTTCCTCGTCCGTGGAGTCGACATTCAACAAAACAAGGCAATAAAGTGATCACCCCAGATGCGAACAATCATGCTAGAGCTAAAGGACAAGGGGACAATTCTAAGGACATTGATGACCCACAGCTTAAAGATTTTCTTCAGGTCATGCAACCTCGGGCAAAGTCTAAGTTGTGGGCAAATGATACTTCATTTGCATCCAATGATGGTAACAGCCAAGCAACATTGAATAAGGATACCGAAGGTGGTACATTGGTTGCAAACCATCCTATCTTAAGTGACTCACTAGTAGATGGAATACCGCCAAATAATCCTGAATCCGACAAGTCACGTGAGCTTAAGCATGATGGATTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAATGGTCTGATTCTGAAAGCAGTGATGATGAAAACGACGATGAAAATGATGATTCGGAAACTGCTGATGAGGAGGACAAAGATAACCATAGTCATGCTAGTAAACATGAAGAAAATTGTGGCAATTACCCTTCTGAAAAAACCCCAAGAAGTGGTGCTCAAGAGTTAGAAGTAGAAGGGAAAGAAGATACTTTTCAAGAGGATGCTGCCAATGATAAGTCTCAGGTTAGTGCAACTGAGGAAGGGGGGCAATCATCAAATCCAGAAGATAAGAAAGAAGTTTCTGAGTCGTCTCGACTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTCTCACAGGTTCATTTAGTTGTTGATAGGGAGACAAAACGATCCAAAGGAATAGCTTATATTcatttttcagttccagaatTTGCAACCAGAGCGCTAGAAGAGTCAGACAATTCAATCTTCCAGGGGAGATTATTGCATGTCATGCCAGCTATACCAAGACATTCAAATAATGAAGAGAACAATGTCTCCAAGGACCAAGGCTCTAAAACTctcaaagaaagaagagaggAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGTCCTGATACAGTTGTTGAAAACGTTGCTCGGAAATATGGTGTTAGTAAGAGTGATTTTATGGATCGAGAAGCTAATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGaaacaaaaaatgcatttaagaAAGCTGGAGTGAATGTGGAGTCTTTGGAGCAGCTTGCCAAGGGTAAAGTTGATGGCGTAAAAAGAAGTAACCATGTAATTTTAGTGAAAAATTTGCCCTATGGTTCTACCGAAAATGAACTCGCAAATATGTTTGGGAAATTTGGTAGtttggaaaaaataattcttcccTCAACAAAAACATTGGCCCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTAAAGTTGCTTTTAAAGGTTTAGCTTACAAGCGCTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCCCAAAATCAACATCTAACGATAATGAGATGAATAGCGGAATTGGTGAAAAGGATGTCAAGCGACAGATATTGGAGCAAGACGTGGAAAGAATATCAGATGTGGATATTGATCCCGACAGAATAGAGGCTCGGTCCTTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAAGGAGCATTTCAGTAAACACATGAAAGAGGGACGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAGAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACCGCTACAAGTGTTTGCAACAATTTACAGGGGACTGTTTTGGACAGTCATGCTCTTATTTTACAACTTTGTCATGCCAAGAATGATGTGAAAGTACAAAGGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACCGATAAGGATCTGAGACAATTGTTTTGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTCGGAAATCATAGAGGATTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCACTTACGGCACTCTCAAGTACTCACTTGTATGGAAGACATCTGGTGATAGAGAGGGCGAAAGAAGGCGAGACTTTGGAGGAACTGCGTGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTCCAAGATGCTAGCTTATCCAAGAAAAGGAAGGCCGTCAGTATGTTTGACgaagaaaatatgaagtttGGAAGGTTTGATTAG 2553 0.3944 MSRICVKNLPKYVAEDRLRELFSQKGEITDVKLKRTKNGKSRQFAFIGFRTDQEAQEAIRYFNRSYLDTLRIICEVAQKRGDANLPRPWSRHSTKQGNKVITPDANNHARAKGQGDNSKDIDDPQLKDFLQVMQPRAKSKLWANDTSFASNDGNSQATLNKDTEGGTLVANHPILSDSLVDGIPPNNPESDKSRELKHDGLISDMDYFKSKVTTEWSDSESSDDENDDENDDSETADEEDKDNHSHASKHEENCGNYPSEKTPRSGAQELEVEGKEDTFQEDAANDKSQVSATEEGGQSSNPEDKKEVSESSRLFVRNLPYTTTEEELEEHFSQFGSVSQVHLVVDRETKRSKGIAYIHFSVPEFATRALEESDNSIFQGRLLHVMPAIPRHSNNEENNVSKDQGSKTLKERREEERKAAEASGDTRAWNSLFMRPDTVVENVARKYGVSKSDFMDREANDLAVRIALGETQVISETKNAFKKAGVNVESLEQLAKGKVDGVKRSNHVILVKNLPYGSTENELANMFGKFGSLEKIILPSTKTLALVVFLEAAEAKVAFKGLAYKRYKDAPLYLEWAPSNVLSPKSTSNDNEMNSGIGEKDVKRQILEQDVERISDVDIDPDRIEARSLFVKNLNFKTTDESLKEHFSKHMKEGRILSVKVKKHLKNGRNVSMGFGFVEFDSTETATSVCNNLQGTVLDSHALILQLCHAKNDVKVQRKVEKDKSSTKLLVKNVAFEATDKDLRQLFCPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGETLEELRARTAAQFNEHSGFQDASLSKKRKAVSMFDEENMKFGRFD 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03558 850 MobiDBLite consensus disorder prediction 145 201 - -
Tsu07g03558 850 CDD RRM6_RBM19_RRM5_MRD1 727 801 - -
Tsu07g03558 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 570 IPR000504 GO:0003723
Tsu07g03558 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 384 IPR000504 GO:0003723
Tsu07g03558 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 629 703 IPR000504 GO:0003723
Tsu07g03558 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 729 796 IPR000504 GO:0003723
Tsu07g03558 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 68 IPR000504 GO:0003723
Tsu07g03558 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Tsu07g03558 850 SUPERFAMILY RNA-binding domain, RBD 504 593 IPR035979 GO:0003676
Tsu07g03558 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 727 803 IPR000504 GO:0003723
Tsu07g03558 850 SUPERFAMILY RNA-binding domain, RBD 304 401 IPR035979 GO:0003676
Tsu07g03558 850 MobiDBLite consensus disorder prediction 145 165 - -
Tsu07g03558 850 SMART rrm1_1 3 75 IPR000504 GO:0003723
Tsu07g03558 850 SMART rrm1_1 508 575 IPR000504 GO:0003723
Tsu07g03558 850 SMART rrm1_1 728 799 IPR000504 GO:0003723
Tsu07g03558 850 SMART rrm1_1 628 706 IPR000504 GO:0003723
Tsu07g03558 850 SMART rrm1_1 313 386 IPR000504 GO:0003723
Tsu07g03558 850 CDD RRM3_RBM19_RRM2_MRD1 313 386 - -
Tsu07g03558 850 Gene3D - 1 121 IPR012677 -
Tsu07g03558 850 Gene3D - 278 427 IPR012677 -
Tsu07g03558 850 MobiDBLite consensus disorder prediction 213 311 - -
Tsu07g03558 850 CDD RRM4_RBM19_RRM3_MRD1 507 578 - -
Tsu07g03558 850 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Tsu07g03558 850 MobiDBLite consensus disorder prediction 89 103 - -
Tsu07g03558 850 MobiDBLite consensus disorder prediction 390 423 - -
Tsu07g03558 850 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 828 - -
Tsu07g03558 850 MobiDBLite consensus disorder prediction 84 123 - -
Tsu07g03558 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 390 IPR000504 GO:0003723
Tsu07g03558 850 MobiDBLite consensus disorder prediction 219 238 - -
Tsu07g03558 850 CDD RRM1_MRD1 2 77 - -
Tsu07g03558 850 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 828 - -
Tsu07g03558 850 MobiDBLite consensus disorder prediction 284 298 - -
Tsu07g03558 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 627 710 IPR000504 GO:0003723
Tsu07g03558 850 CDD RRM5_RBM19_like 627 708 IPR034423 -
Tsu07g03558 850 Gene3D - 621 722 IPR012677 -
Tsu07g03558 850 Gene3D - 723 825 IPR012677 -
Tsu07g03558 850 Gene3D - 500 603 IPR012677 -
Tsu07g03558 850 SUPERFAMILY RNA-binding domain, RBD 626 803 IPR035979 GO:0003676
Tsu07g03558 850 MobiDBLite consensus disorder prediction 403 423 - -
Tsu07g03558 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 579 IPR000504 GO:0003723
Tsu07g03558 850 SMART rrm2_1 3 75 IPR003954 GO:0003676
Tsu07g03558 850 SMART rrm2_1 313 386 IPR003954 GO:0003676
Tsu07g03558 850 MobiDBLite consensus disorder prediction 239 257 - -
Tsu07g03558 850 MobiDBLite consensus disorder prediction 266 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03558 Tsu-Chr7 41710271 41718794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03558 620 820 Eukaryotic Initiation Factors Gene Family AT1G49760 29.439 3.29e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03558 K14787 - gmx:100798742 1169.07