Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03549 ATGGTTTCTGTTGTGGCATCGTTTTGTGTTGGTCTGTTCTTCTGTTTTGTCGgatattttgtgaaaaatgaGAGTGAAGAAGGTGATAGAATTCTTCAAGAACCACTTTTGAATGGTAATGGTAATGCTTTAGAGTTACAAGAGACTAAAGGGAGTGACATTGTTACTCCTTTTTCAAATGCTGGAATTCTAAGCCTTCTCACTTTCACTTGGGTCGGTCCACTTATAGCATTTGGCAATAAGAAGACCTTAGACCTTGAGGATCTTCCTCAGCTAGATAGTAGAGATAGTGTGATTGGAGCTTTTCCAATTTTCAGAGACAAAATTGAAGCTGATTGTGGTGCAATCAATAGAGTAACCACACTTAAGTTGGTTAAGTCATTGATAATCTCAGGGTGGAAAGAGATTCTTATTACTGCTTTTCTTGCATTGGCAGATACTTGTGCTTCTTATATTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTGATGGAAAAAGGCTATATGAGAATCAAGGCTATGTATTGGTTTCtgcttttatattttcaaagcTTGTAGAGTGCTTAGCAAAAAGGCATTGGTTCTTTAGGTTGAAGCTACTCGGAATTCGAATCCGAGCACTGCTTGTGACTATGATATATGATAAAGCCTTAACACTTTCATGTCAATCAAGGCAGTGTCACACTTCTGGAGAAATAATCAATTTCATTACCGTTGATGTCGAAAGAGTTGGTAATTTCAGTTGGTACATGCATGATTTGTGGATATTAGCTTTGAAAGTTACATTGGCATTgttgattttgtataaaaacCTTGGACTTGCTTCGGTTGCTGCTTTTGTTACAACCATCATTGTTATGTTGGCAAATATTCCATTGGGATCATTACAAGAGAAGTTTCAAAATAAGTTGATGAAGTCAAAGGATACTAGAATGAAGAGCACATCTGAAACTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCGAAAATAATTGAGCTCAGGAAGGCAGAACAAGgctggttaaaaaaaattctttttactaAAGCCATCACTACATTTTTCTTTGAGAGTTCACATACGCTTGTATGTGTGGTTACGTTTGGTACTTGTATGCTCATAGGGATCCCACTTGAGTCGGGGAAGATTCTGTCAGCACTTGCAACACTCGGGATTCTTACCGGGCCTATTTATAATCTTCCAGATGTAATTTCTGTGATAGCACAAACTAAAGTTTCTCTTGATAGGATCACGTCATTCATTCGTCTTGATGACTTGCAGCCTGATGTTGTCGAAAAGCTTCCTCCGGGTAGTTCTGATACTTCAATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCACCTAACCCAACTTTGCAGAACATAAACCTCAAAGTTTTTCATGGCATGAAGGTTTCTGTTTGCGGTACAGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAAAAAAGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTATGAGAAGGAATGCTTGCTGGGTGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCGGATCTTCTTAACATTGGAACCGACTTTATGGAACTTGTTGGAGCACACAGAGAAGCTTTGTCTACACTTGAATCATTGGATGGAGGAAAAGCCTCTAATGAAATAAATGATAAAGGCGAACCGAAAGGCCAACTtgttaaagaagaagaaagggaGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGTTTTCGTACCGTTCATATTATTGGCTCAGATTCTTTATAAAGCTCTTGTAATTGGAAGCGACTATTGGATGATGTGGAAAACTCCCATCTCAGCAGATGTGAAGCCACCTGTTGAAGGAACGACTCTTATTGAAGTCTATGTTGGTTTGGCCATAGGAAGTTCTTTATGCGCTCTTGTTATAGAATTGTTACTTGTTACAGTTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATCTTTCGGGCCCCCATGTCATTTTTCGATTCTACTCCATGTGGAAGAATCCTTAATAGAGCTTCTACTGACCAAAGTTCTGTGGATACAACCATTCCTTATCGAATTGGCTCATTTTCCTTTATGGTGATCACGCTTCTGGGAACTATAGCAGTGATGTCTGAGGTTGCATGGCAAGTTTTCATTGTCTTTGTACCCGTGATAGCAGTCAGCATTTGGTATCAgCGATATTATTTACCATCAGCACGTGAACTGTCACGTTTAATTGGAATATGCAGAACCCCGATCATTCAATACTTTGCAGAAACAATTTCCGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTTCATGAAACAAATTTGAAACTGTCTGACGAGTTTTCTCGACCAATGTTCAACATGGCTGCTGCTATGGAGTGGTTATCATTTCGCATAGATATTTTGTCTTCCATCATATTTGCATTTTCCTTGACATTCTTGATATCAATTCCACCTGGAATCATAAATCCAAGCATTGCTGGTCTAGCTGTTACTTATGGTCTAACTTTAAACTTGGTAGAATTTGTGGTGATATGGAATCTTTGTAACTTGGAGAACAATATTATATCGGTAGAAAGGATACTTCAGTATACAACCATTCTTAGTGAGCCTCCCCTTgttttagaagaagaaaataggCCAGATCCTTCTTGGCCCGCATATGGCAAAGTTGATATACGGAACTTGCAGGTTCGATATGCTGCTCATCTTCCGCTTGTGTTGCATGGACTGACATGCACATTTCACGGAGGATTGAAAACTGGCATTGTTGGTAGAACAGGTAGTGGCAAATCAACTCTTATACAAACACTTTTCCGACTCATTGAACCTACTGCTGGGGAAGTTATCATTGACAGCATCAACATCTCTACAATCGGACTGCATGATTTGAGGTCTCGACTAAGCATTATTCCGCAAGATCCAACAATGTTTGAGGGGACAGTGAGAAGTAATCTGGACCCCCTTGAAGAGTACACTGATGAACAAATATGGGAGGCCTTGGATAAGGGTCAACTGGGAGATGAAGttagaaagaaagaaggaaaactGGACTCTTCAGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAACATTTCACAGACTCTACCGTCATTACCATTGCACATCGAATAACTTCAGTCGCCACCGAGATCAACGCTAATAATCAAGCAACTCCACGAGCCATAACCGTCCAAGCCGACGTATCAGATCCAGCCGGTGTGAAATCTCTCTTCGACTCCACTGAACAAGCCTTATTCTCCGCTGTCGCGATTGAGGAAGGCGGAAACCGTAaggtgaaagagaaaaaaaatatcaacgtTATATTGGCAGTTACTAAACTTGTTTTCGTGGCTAATTTTCATGTTTGTTAA 3723 0.3787 MVSVVASFCVGLFFCFVGYFVKNESEEGDRILQEPLLNGNGNALELQETKGSDIVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDLPQLDSRDSVIGAFPIFRDKIEADCGAINRVTTLKLVKSLIISGWKEILITAFLALADTCASYIGPYLIDSFVQYLDGKRLYENQGYVLVSAFIFSKLVECLAKRHWFFRLKLLGIRIRALLVTMIYDKALTLSCQSRQCHTSGEIINFITVDVERVGNFSWYMHDLWILALKVTLALLILYKNLGLASVAAFVTTIIVMLANIPLGSLQEKFQNKLMKSKDTRMKSTSETLRNMRILKLQGWEMKFLSKIIELRKAEQGWLKKILFTKAITTFFFESSHTLVCVVTFGTCMLIGIPLESGKILSALATLGILTGPIYNLPDVISVIAQTKVSLDRITSFIRLDDLQPDVVEKLPPGSSDTSIEVVDGNFSWDLSSPNPTLQNINLKVFHGMKVSVCGTVGSGKSTLLSCVLGEVPKISGILKVCGKKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELVGAHREALSTLESLDGGKASNEINDKGEPKGQLVKEEEREKGKVGFSVYWKYITTAYGGVFVPFILLAQILYKALVIGSDYWMMWKTPISADVKPPVEGTTLIEVYVGLAIGSSLCALVIELLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPCGRILNRASTDQSSVDTTIPYRIGSFSFMVITLLGTIAVMSEVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLIGICRTPIIQYFAETISGTSTIRSFDQQSRFHETNLKLSDEFSRPMFNMAAAMEWLSFRIDILSSIIFAFSLTFLISIPPGIINPSIAGLAVTYGLTLNLVEFVVIWNLCNLENNIISVERILQYTTILSEPPLVLEEENRPDPSWPAYGKVDIRNLQVRYAAHLPLVLHGLTCTFHGGLKTGIVGRTGSGKSTLIQTLFRLIEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKGQLGDEVRKKEGKLDSSGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVATEINANNQATPRAITVQADVSDPAGVKSLFDSTEQALFSAVAIEEGGNRKVKEKKNINVILAVTKLVFVANFHVC 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03549 1240 CDD ABCC_MRP_domain2 982 1164 - -
Tsu07g03549 1240 Pfam ABC transporter 469 544 IPR003439 GO:0005524
Tsu07g03549 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1165 IPR027417 -
Tsu07g03549 1240 CDD ABC_6TM_ABCC_D2 664 958 IPR044726 GO:0140359
Tsu07g03549 1240 Gene3D - 439 548 IPR027417 -
Tsu07g03549 1240 Gene3D - 549 617 IPR027417 -
Tsu07g03549 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 930 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03549 1240 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 547 626 - -
Tsu07g03549 1240 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 547 626 - -
Tsu07g03549 1240 SMART AAA_5 478 711 IPR003593 -
Tsu07g03549 1240 SMART AAA_5 1010 1205 IPR003593 -
Tsu07g03549 1240 Pfam ABC transporter transmembrane region 137 404 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03549 1240 Pfam ABC transporter transmembrane region 700 906 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03549 1240 CDD ABC_6TM_ABCC_D1 138 425 IPR044746 GO:0140359
Tsu07g03549 1240 SUPERFAMILY ABC transporter transmembrane region 128 436 IPR036640 GO:0005524|GO:0016021
Tsu07g03549 1240 Pfam ABC transporter 1001 1131 IPR003439 GO:0005524
Tsu07g03549 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 986 1207 IPR003439 GO:0005524
Tsu07g03549 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 417 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g03549 1240 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 626 1165 - -
Tsu07g03549 1240 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 547 - -
Tsu07g03549 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 594 IPR027417 -
Tsu07g03549 1240 Gene3D ABC transporter type 1, transmembrane domain 116 433 IPR036640 GO:0005524|GO:0016021
Tsu07g03549 1240 Gene3D ABC transporter type 1, transmembrane domain 626 963 IPR036640 GO:0005524|GO:0016021
Tsu07g03549 1240 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 626 1165 - -
Tsu07g03549 1240 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 547 - -
Tsu07g03549 1240 Gene3D - 966 1171 IPR027417 -
Tsu07g03549 1240 SUPERFAMILY ABC transporter transmembrane region 665 965 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03549 Tsu-Chr7 41594280 41599494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03549 982 1204 Calmodulin-binding Proteins AT2G36910 24.280 2.97e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03549 - K05666 qsu:112021047 1531.15