Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03545 ATGTGGGGTTACAAGAGGTTTTTTAAGAGGACAGCTTTAGAGACATCGGACTACCTAAAAGATGACTGCCTATCTGTAAATTGTAGTGTTGGTGTTGTGAGGTCACATACGGAGGGCCCGAAGATATATTCCATTGCAATACCACCTTCCAACATCGGTCACCAATTTGGTCAATTGCTGGAAAATGGTAAAGGAAGTGATGTGAGTTTTGAAGTGGATGGAGAAGTTTTCACTGCTCATAAATTGGTGCTAGCAGCTCGGTCTCCTGTTTTCAGAGCTCAGCTTTATGGTCCTATGAAAGATCACAATACCAAGTGTATTAAAGTTGAAGACATTGAGGCTCCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCACTGCCTGACATGCAAGAGCTTACCGGGATGAACATAAAATGGGCAACAACCTTGATGGCCCAGCATCTTCTAGCCGCTGCTGATCGGTATGCCTTAGAGAGGCTCAGGCTTATATGTGAAGCGGGTCTATGTGAAGATGTTGCCATAAATACCGTGGCTACAACTTTAGCCCTGGCAGAGCAGCACCACTGTTTCCAGCTGAAGGCAGTCTGTCTCAAGTTTATTGCTACCTCCGAAAATCTCAGAGGTATGCTTCTCCAAAGTTATTATACTTAA 660 0.4364 MWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSHTEGPKIYSIAIPPSNIGHQFGQLLENGKGSDVSFEVDGEVFTAHKLVLAARSPVFRAQLYGPMKDHNTKCIKVEDIEAPVFKALLHFIYWDSLPDMQELTGMNIKWATTLMAQHLLAAADRYALERLRLICEAGLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRGMLLQSYYT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03545 219 CDD MATH 1 30 IPR002083 GO:0005515
Tsu07g03545 219 SMART BTB_4 66 175 IPR000210 GO:0005515
Tsu07g03545 219 Gene3D Potassium Channel Kv1.1; Chain A 34 205 IPR011333 -
Tsu07g03545 219 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 33 IPR008974 GO:0005515
Tsu07g03545 219 CDD BTB_POZ_BPM_plant 52 172 - -
Tsu07g03545 219 ProSiteProfiles BTB domain profile. 66 125 IPR000210 GO:0005515
Tsu07g03545 219 SUPERFAMILY TRAF domain-like 1 34 - -
Tsu07g03545 219 Pfam BTB/POZ domain 57 173 IPR000210 GO:0005515
Tsu07g03545 219 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 2 213 - -
Tsu07g03545 219 SUPERFAMILY POZ domain 43 173 IPR011333 -
Tsu07g03545 219 ProSiteProfiles MATH/TRAF domain profile. 1 30 IPR002083 GO:0005515
Tsu07g03545 219 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 2 213 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03545 Tsu-Chr7 41561999 41565478 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu07g03545 BTB 3.8e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03545 K10523 - gmx:102668882 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03545 07 41561999 41565478 Tsu07g03545 07 41561999 41565478 ECH