Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03543 ATGGCTACTACACTAGTTCTCagaaattcttcttcttctacttccAAACGtctttctccttttcttttttcttctcaattcCACACTTCCCTCACTCGTTCGCCGCAATCTCAATCACCTCTCACTAATGATACCACTACTccttcttcctcctcctccaATCCATGGTGGAGATCCATGGCTACTTTCACCAGAACAAAACCTCATGTGAACGTTGGAACTATTGGACACGTAGATCACGGGAAAACTACACTAACTGCTGCAATCACCAGAGTTCTTGCTGATGAAGGAAAAGCTAAAGCTGTTGCTTTTGATGAAATTGATAAAGCTCctgaagagaagaagagaggaattACAATTGCTAcgGCTCATGTTGAGTATGAGACTGTAAAAAGGCATTATGCACATGTTGATTGCCCTGGACATGCCGATTATGTTAAAAATATGATTACTGGAGCAGCGCAAATGGATGGTGGCATCCTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTTGACGCTGTCGATGATCCAGAGCTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTAAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCATTGTCTGCATTACAAGGTACAAATGAAGAAATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTTGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAACCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACCGGTGTTGAGATGTTCAAGAAGATATTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAAGACATTCAACGTGGTCAGGTTAGAAGTTATCATCCAGCTTTACCTATTTGTTTGTAG 1095 0.39 MATTLVLRNSSSSTSKRLSPFLFSSQFHTSLTRSPQSQSPLTNDTTTPSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVRSYHPALPICL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03543 364 CDD EF_Tu 68 262 IPR041709 -
Tsu07g03543 364 MobiDBLite consensus disorder prediction 31 57 - -
Tsu07g03543 364 CDD EFTU_II 270 353 IPR033720 -
Tsu07g03543 364 Gene3D - 59 262 IPR027417 -
Tsu07g03543 364 Pfam Elongation factor Tu domain 2 284 353 IPR004161 GO:0005525
Tsu07g03543 364 TIGRFAM small_GTP: small GTP-binding protein domain 70 206 IPR005225 GO:0005525
Tsu07g03543 364 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Tsu07g03543 364 PANTHER ELONGATION FACTOR TU 18 354 - -
Tsu07g03543 364 SUPERFAMILY Translation proteins 264 356 IPR009000 -
Tsu07g03543 364 Gene3D Translation factors 265 360 - -
Tsu07g03543 364 TIGRFAM EF-Tu: translation elongation factor Tu 59 354 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tsu07g03543 364 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 263 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PANTHER ELONGATION FACTOR TU-RELATED 18 354 - -
Tsu07g03543 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 285 IPR027417 -
Tsu07g03543 364 Pfam Elongation factor Tu GTP binding domain 67 260 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Tsu07g03543 364 PRINTS GTP-binding elongation factor signature 188 197 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03543 Tsu-Chr7 41550393 41553934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03543 65 355 Eukaryotic Initiation Factors Gene Family AT5G60390 35.093 1.14e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03543 K02358 - gmx:100791600 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03543 07 41550393 41553934 Tsu07g03543 07 41550393 41553934 ECH