Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03539 ATGATGACAATGATAAATCCTTGGACTGGAATCGGTTGTTGTTTGAGTGCAATTTCTCTATACGTTCTTAAAATAACCATTGGCAAGAATGCGGAGATCCTTAAATCGGTGACCCGGGTCAAGCAATTGAAGGAACTAGCTCAACTATTAGATACTCGAAATTCACCGTTGCTCGTTGCAATTTCTGGAAAAGTTGCCTCTGATAACTCAATTATATGCGAATTAAGTGGTTTAGCGGGTGTAATTGTGGAAGATACGGTAGAGCAACATTTTCTTAAACATGACAATCGCTCTTGGATAGAACATTTTGCTGTAACGTCGTTCATGAATAAAGAGGTTCCTTGGTATCTGGAAGATGCAACTGGTTGTGTGAATGTGGTTGGAGCTCAAGAGGCCACAGATTTTATGCTACCTTTTCAAAAGGAAGTATTTAAACAATCCAAACCATGGattatacataaaatattacattattTCCGAGGTCTCAAGGAGCTTGGTTTTAAGAGAATCGAACGAACACTTCCAATCAACACTTCCTTGACAGTTATCGGTGAGGTTTCTAAAGACGATGCTGGCACCATTTGGATTCAACAACCTCAGTCAGGACCATTTTATGTCACTTCCAACACAATTGATCAGCTTATAATTGCTAATCATGGGAATTTGGCGAGGTTGTGGTGTAAGTATGCATCCATTGGCTTTTCAATATTTGGTTCTTGTATAATAGTTATGCATACTATTCAATACATCTTGGAACGTCGAAGACAATGTGAACTGCATAAAAGGATACTTGAGGAAGCTGCTAAGGAGTCACAACGATATATTGAAGGTAAAATGGATGACGACTTCTCAGATTTGTGTGTGATATGCATTGATCAGAAATACAGCGCTGCTTTTGTCCCGTGCGGGCATATGTGTTGCTGTACAACTTGTTCTCGACCCTTAAAAATCTGCCCTCTTTGCCGCGGACAGATAAAGCAAGTTTTGCAAATTTTCCGTCCCTAA 1005 0.392 MMTMINPWTGIGCCLSAISLYVLKITIGKNAEILKSVTRVKQLKELAQLLDTRNSPLLVAISGKVASDNSIICELSGLAGVIVEDTVEQHFLKHDNRSWIEHFAVTSFMNKEVPWYLEDATGCVNVVGAQEATDFMLPFQKEVFKQSKPWIIHKILHYFRGLKELGFKRIERTLPINTSLTVIGEVSKDDAGTIWIQQPQSGPFYVTSNTIDQLIIANHGNLARLWCKYASIGFSIFGSCIIVMHTIQYILERRRQCELHKRILEEAAKESQRYIEGKMDDDFSDLCVICIDQKYSAAFVPCGHMCCCTTCSRPLKICPLCRGQIKQVLQIFRP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03539 334 CDD RING-HC_LRSAM1 286 325 - -
Tsu07g03539 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 333 IPR013083 -
Tsu07g03539 334 PANTHER - 6 301 IPR044231 GO:0004842|GO:0016567
Tsu07g03539 334 SUPERFAMILY RING/U-box 285 328 - -
Tsu07g03539 334 Pfam Zinc finger, C3HC4 type (RING finger) 285 328 - -
Tsu07g03539 334 ProSiteProfiles Zinc finger RING-type profile. 287 322 IPR001841 -
Tsu07g03539 334 Pfam E3 Ubiquitin ligase 89 240 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03539 Tsu-Chr7 41523911 41527100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03539 7 277 C3H Transcription Factor Family AT1G63900 51.460 9.29e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03539 K15688 - fve:101298960 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03539 07 41523911 41527100 Tsu07g03539 07 41523911 41527100 ECH