Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03529 atggaGGATTTGGAAAAGAACAATGGTGATTTTGTTtccaaggaagaagaaattagagTTTTCATCAAATCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAAATAGGGTCCAAATATCCTTCAATTGCAGAAGAAATACAAAGTTTTGCAAATGTTGATCGTGCTCGTCGAAAGCTTAATgcATTTAAAGTGCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGAAGCAAGTTTTTTGATGAATTATGTAAGTTTGCTCATACGGGCCTAACCAAAACAATCAGTAGTGCTACTAATCTTTCCCAGAGAAATCTTTATATCGAAAACTTATCACCACAAGTAACAAGTGAAATACTGTTCAACTATTTTAAGAGGCATGGTGATATGGAGGAATGTATACTTGCATTTCAACGCCACAAGGATTTAACTGAAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAACCACTCTTGAGGGAACAACTATAActgtaaaatattttgatttccacAATGATGGAGGTGGTCAGCCGTCGTCTGTTCCTGCAAGAGTAGCTCCAACGGCAGCCTTACATATGACTCCAGAATATGTTGAAGGTTACACATACCCCCGACCTGCTACACCATATGTTGCACCTCCTTATCCATACCCCCAAACAGGTTCACCATATGCCGCGTCTCCTTATCCATACTCCCAAACTGATGCACCACATGCTACACCACCTTATCCATACCCCCGAACTGCTGCACCACCTTATCCGTACCCCCGAATTGCTGTGCCTCCTTATCCATACCCCCAAACTGATGCACCACATGCTACACCACCTTATCCATACCCCCGAACTGCTGTTCCTCCTTATCCATACCCTCGAACTGCTGCACCATATGCTGCATCTCCTTATCGAACACTATGA 987 0.4073 MEDLEKNNGDFVSKEEEIRVFIKSLSKPQLVDLLSQIGSKYPSIAEEIQSFANVDRARRKLNAFKVHGEIEEGNVMLDRDTGKSAQRSKFFDELCKFAHTGLTKTISSATNLSQRNLYIENLSPQVTSEILFNYFKRHGDMEECILAFQRHKDLTESRSGFVTYKTAEAAKNAIKDLDQTTLEGTTITVKYFDFHNDGGGQPSSVPARVAPTAALHMTPEYVEGYTYPRPATPYVAPPYPYPQTGSPYAASPYPYSQTDAPHATPPYPYPRTAAPPYPYPRIAVPPYPYPQTDAPHATPPYPYPRTAVPPYPYPRTAAPYAASPYRTL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03529 328 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 8 84 - -
Tsu07g03529 328 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 94 274 - -
Tsu07g03529 328 SMART rrm1_1 116 190 IPR000504 GO:0003723
Tsu07g03529 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Tsu07g03529 328 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 84 - -
Tsu07g03529 328 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 94 274 - -
Tsu07g03529 328 SUPERFAMILY RNA-binding domain, RBD 111 203 IPR035979 GO:0003676
Tsu07g03529 328 CDD RRM_SF 117 190 - -
Tsu07g03529 328 Gene3D - 99 202 IPR012677 -
Tsu07g03529 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03529 Tsu-Chr7 41477418 41479249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03529 10 84 C2H2 Transcription Factor Family AT2G19380 30.000 7.30e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03529 K12741 - gmx:100776344 202.601