Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03528 ATGAAggatttgaagaagaaaagaaaaatagatgAGACAACAAACAACAGTGAAGGAGAACTTAGACTTCTCATGGAACCTCTTGCCAAACCTGTACTCATTGATCTTCTCACTAAACTAGGTTCCAAAGATCCTTCAATTGCAGCAGAAATAGAAACTATTGCATATGCTGATCATGTCCATCGAAAGCTTTTTGTTCGTGACTTGTCCTTGAATACCACTTCACAAACTTTGTGTAATGCATTTAAAGTGTATGGAGAAATTGAGGATGGGAATGTGATTGTTTCTGAAGACACTCAAAAATCACGTGGATATGGATATATCCTTTACAGAGATGTGAAATCGGCTCAGAAAGCGTTGTCTGTACCTAGCAAGTTCATTGATGGAAGATTGACTCTATGTATGTTAGCTCGTGATGAGGGCAAAACCAAAACTAGTGATACTTCGCTGAGAAAGCTTTATATTGGAAACTTATCACCAGAAGTAACAGATGGAATGCTGCACGACTATTTTGGGAGCCTTGGTGATATTGACGAATGTTCAGTTGTATATAAAAAGGATTCATATGTATCACGTGGATACGGCTTCGTTACATACAAGACAGTAGAGGCTGCAAAGGAAGCCATAGCTGACCTACATCGCATGACTTTTAACGGAAGAAATATAATTGTAAAATATGCTACTAATCCCCGTGAGGGTGGAGGTGGTCAGTCATCTGCTCCTCCAAAGGCAGCCTTACCTGTGCCTCCAAGATATGTTGAAGGTTATCCCCGCGAGGGTGGAGGTGGTCAGTCGTCTGTTCCTCCAACGGCAGCCTTACCTGTGCCTCCAGGATATACATACCCCCAAACTGCGGCACCTCCTTATCCATACCCTCAAACATCTGCACCATATGCTGCATCTCATTATCCAAGTCTTCGCCCTGGACCTTCTACTTATCAAACACATGGTTATGGACAGGGTCCTTATCCTCCGCATTACTATCAAAACCAATGA 996 0.4127 MKDLKKKRKIDETTNNSEGELRLLMEPLAKPVLIDLLTKLGSKDPSIAAEIETIAYADHVHRKLFVRDLSLNTTSQTLCNAFKVYGEIEDGNVIVSEDTQKSRGYGYILYRDVKSAQKALSVPSKFIDGRLTLCMLARDEGKTKTSDTSLRKLYIGNLSPEVTDGMLHDYFGSLGDIDECSVVYKKDSYVSRGYGFVTYKTVEAAKEAIADLHRMTFNGRNIIVKYATNPREGGGGQSSAPPKAALPVPPRYVEGYPREGGGGQSSVPPTAALPVPPGYTYPQTAAPPYPYPQTSAPYAASHYPSLRPGPSTYQTHGYGQGPYPPHYYQNQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03528 331 MobiDBLite consensus disorder prediction 270 294 - -
Tsu07g03528 331 SMART rrm1_1 63 135 IPR000504 GO:0003723
Tsu07g03528 331 SMART rrm1_1 152 225 IPR000504 GO:0003723
Tsu07g03528 331 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 11 315 - -
Tsu07g03528 331 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 11 315 - -
Tsu07g03528 331 SMART rrm2_1 63 135 IPR003954 GO:0003676
Tsu07g03528 331 SMART rrm2_1 152 225 IPR003954 GO:0003676
Tsu07g03528 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 229 IPR000504 GO:0003723
Tsu07g03528 331 SUPERFAMILY RNA-binding domain, RBD 62 143 IPR035979 GO:0003676
Tsu07g03528 331 MobiDBLite consensus disorder prediction 228 331 - -
Tsu07g03528 331 Gene3D - 42 141 IPR012677 -
Tsu07g03528 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Tsu07g03528 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 222 IPR000504 GO:0003723
Tsu07g03528 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 139 IPR000504 GO:0003723
Tsu07g03528 331 Gene3D - 142 266 IPR012677 -
Tsu07g03528 331 SUPERFAMILY RNA-binding domain, RBD 147 247 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03528 Tsu-Chr7 41474062 41476210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03528 147 242 C2H2 Transcription Factor Family AT2G19380 34.021 6.10e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03528 K12741 - gmx:100776344 267.7