Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03492 ATGGAGCTAGCTTTGAGCTTAGGAGACACACCAAAACCATTTTCTTTGTTTGAAAACCCCAACAAAGGTTTCTCAATAGTACTTGAGCAAGCTCAAAAATCCTTAGAGGAAAAAAGAGGTTCATCAGATCCACCAATTCAACTCAACCTTCTTCCTTCAACGCCGGTTCATCATCGTTCTCATCCTTCTCCTCATCAAATTCCTTGGCTCAACCATGCACTGGATGTGGAACCGATTGCGAGGGTGACAAATGCAAACCGATTTCGATTGGCGTCCGTGGAAGATACTAATGACGAGGGAGCTGCGGTTTCATCCCCGAATAGCGCGGCGTCATCTTTTCGGATGGATTTCTCTATCATGAATGGTAATGGTGATGCTAGAAATAGTAGCCGTGAGGGGGGTGtcgatagtgatgatgaagaaaatggATCTACTAGGAAGAAACTAAGATTATCTAAAGAGCAATCagcttttcttgaagaaacttTCAAAGAACACACCACTCTCAATCCTAAACAAAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAATTAAAGCAAACAGAAGTGGATTGTGAGTACTTAAAAAAATGTTGTGAGACACTAACAGAAGAAAATAGAAGGTTACAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACTTCACAACCATTCTACATGCAACTTCCAGCTACTACACTCACTATGTGTCCCTCTTGTGAGAGGGTTGCCACCAACACCACAGGAGCAGCCACCGCAACCAAACAAACCGCCTCGATCGCCGCCGGCGGGCGccaccaaaaataa 855 0.4058 MELALSLGDTPKPFSLFENPNKGFSIVLEQAQKSLEEKRGSSDPPIQLNLLPSTPVHHRSHPSPHQIPWLNHALDVEPIARVTNANRFRLASVEDTNDEGAAVSSPNSAASSFRMDFSIMNGNGDARNSSREGGVDSDDEENGSTRKKLRLSKEQSAFLEETFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGAATATKQTASIAAGGRHQK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03492 284 MobiDBLite consensus disorder prediction 131 151 - -
Tsu07g03492 284 MobiDBLite consensus disorder prediction 120 151 - -
Tsu07g03492 284 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
Tsu07g03492 284 CDD homeodomain 146 203 IPR001356 GO:0003677
Tsu07g03492 284 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Tsu07g03492 284 Pfam HD-ZIP protein N terminus 29 113 IPR006712 GO:0005634
Tsu07g03492 284 Pfam Homeodomain 146 200 IPR001356 GO:0003677
Tsu07g03492 284 Coils Coil 208 238 - -
Tsu07g03492 284 SMART HOX_1 144 206 IPR001356 GO:0003677
Tsu07g03492 284 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 29 277 - -
Tsu07g03492 284 Gene3D - 150 200 - -
Tsu07g03492 284 PANTHER - 29 277 - -
Tsu07g03492 284 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Tsu07g03492 284 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Tsu07g03492 284 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03492 Tsu-Chr7 41135183 41136906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03492 43 258 Homeobox Transcription Factor Family AT3G60390 52.124 6.79e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g03492 HD-ZIP_N 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03492 K09338 - tcc:18599131 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03492 07 41135183 41136906 Tsu07g03492 07 41135183 41136906 ECH
Tsu07g03492 07 41135183 41136906 Tsu01g01983 01 20163221 20165709 PCT