Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03490 ATGGGGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCTGACCCGGAACCACAAACTGGGTCAATAGCTAATGAAGCTTTAAATTTGGATGAATGGATTGAGGAGCCTCTTCAGCGAATTAGCGAAGCTGCTGCGAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGAGGTATCCTCAACCGGTTCATCAGATTCTACCTCAACCCTCTTATGCTCAAGTTCATCAAATTTTACCTGAACCTGCACGCCATATTTATATCCCACCCGAAGCTCGCAATATCTCTATCgaattgaacaattttttggtcAATTCGGGTAATGGAACTGGATTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGCTCCTGCACCGAAAGCGTGTGAGAATAATAATGGTGTTACGGAGGATGAGACTTCGCAGAAGAAGAaggatgatgttgaaaagactGGTGGTGGTGATGGGGATTTTTTCGATTGTAATATCTGTTTGGACTTGGCCAAGGAACCTGTTTTGACTTGCTGTGGTCATCTGTTTTGTTGGCAATGCTTATATCGATGGCTGCATCTGCATTCGGATGCTAAGGAGTGTCCGGTTTGCAAGGGAGAGGTGACGATTAAGAATGTTACCCCTATATATGGCCGTGGGAATAATGCTCGTGTTCTTGAGGAGGATTCTGCTCTTAAAATCCCTCCTAGGCCACAAGCAAAGCGTGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCCGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATTTCAGTAGGGATTTAGTTCAGCCAAATGAACCAGAAAATGCTCGTGGAACAGCAGAGAGAACTACTTCCTTGTTAAGTAGGTTTTTGACATCTCGAGGCATGCGTAGAGAGCAGAATCCTGTGCCACCCACCGATGATGTTGCTGACTTGAATCAGAACAATGTTAATAATGGTGCTGAGTTGGGAGGGGATAACCGCAGGATGCAATCCCTTTTGCTTAGAAGATCACAATCACATAGAGCAACACTTTCTACTCTTTCATCGGCACTTACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTTCTTCAGTTGATGACAGAGATTCATTTTCAAGCATTGCTGCTGTAATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCAATGGTAACCTCTTCTAGGAGGAGAACCGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGGCGTCTGAATTGA 1371 0.4442 MGEENSDAMNLDLNLGPDPEPQTGSIANEALNLDEWIEEPLQRISEAAARLRGRQRWRWRQLPRYPQPVHQILPQPSYAQVHQILPEPARHIYIPPEARNISIELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEAPAPKACENNNGVTEDETSQKKKDDVEKTGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKNVTPIYGRGNNARVLEEDSALKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIDFSRDLVQPNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPTDDVADLNQNNVNNGAELGGDNRRMQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPSSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDSGDSRAPRRRRLN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03490 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 241 IPR013083 -
Tsu07g03490 456 CDD RING-HC_AtRMA_like 172 216 - -
Tsu07g03490 456 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Tsu07g03490 456 PANTHER OS01G0830200 PROTEIN 13 434 - -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 425 456 - -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 1 24 - -
Tsu07g03490 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 434 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu07g03490 456 MobiDBLite consensus disorder prediction 428 456 - -
Tsu07g03490 456 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Tsu07g03490 456 SUPERFAMILY RING/U-box 170 227 - -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 150 164 - -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 130 164 - -
Tsu07g03490 456 SMART ring_2 174 214 IPR001841 -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 316 347 - -
Tsu07g03490 456 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Tsu07g03490 456 MobiDBLite consensus disorder prediction 326 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03490 Tsu-Chr7 41118635 41120972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03490 1 447 C3H Transcription Factor Family AT3G58030 52.258 2.51e-132 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03490 K10666 - gmx:100811099 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03490 07 41118635 41120972 Tsu07g03490 07 41118635 41120972 ECH