Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03477 ATGGCAGCAGAATCTGAAGATATTCAACCTTTGGTTTGCGATAATGGAACCGGCATGGTTAAGGCTGGTTTTGCAGGAGATGATGCACCAAGGGCAGTGTTTCCTAGCATAGTAGGGCGTCCACGACATACAGGGGTAATGGTTGGGATGGGACAAAAAGATGCATATGTAGGTGATGAAGCACAATCGAAAAGAGGTATATTGACATTGAAATATCCAATTGAGCATGGAATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTATAATGAACTTCGTGTTGCTCCTGAAGAACATCCTGTTCTTCTTACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCTCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTTGATTCTGGGGATGGTGTTAGTCACACGGTTCCCATCTATGAGGGTTATGCACTTCCACATGCAATCCTTCGTTTGGATCTTGCAGGCCGCGATTTAACCGATGCGTTGATGAAGATTTTAACCGAGCGTGGTTACACTTTCACTACTTCTGCAGAGCGTGAAATTGTGAGGGATGTGAAGGAGAAATTGGCTTATATTGCTCTTGATTATGAGCAGGAGTTGGAAACTGCTAAGACTAGCTCAGCTGTTGAGAGGACCTATGAGTTACCTGATGGGCAGGTGATCACAATAGGTGCTGAAAGGTTCCGATGCCCTGAAGTTTTGTTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACGACGTTTAACTCGATCATGAAGTGTGACGTCGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGTAAGGAGATTACCGCATTGGCACCTAGTAGCATGAAAATAAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCCCTTAGCACTTTTCAACAGATGTGGATTTCAAAGGCAGAATATGATGAATCTGGGCCATCAATAGTACACAGGAAATGCTTCTAA 1137 0.4327 MAAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVERTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03477 378 CDD NBD_sugar-kinase_HSP70_actin 11 184 - -
Tsu07g03477 378 ProSitePatterns Actins signature 2. 359 367 IPR004001 -
Tsu07g03477 378 PANTHER ACTIN-97 4 377 - -
Tsu07g03477 378 SMART actin_3 8 378 IPR004000 -
Tsu07g03477 378 Gene3D - 141 341 - -
Tsu07g03477 378 Gene3D - 11 372 - -
Tsu07g03477 378 ProSitePatterns Actins and actin-related proteins signature. 107 119 IPR020902 -
Tsu07g03477 378 PRINTS Actin signature 118 131 IPR004000 -
Tsu07g03477 378 PRINTS Actin signature 143 162 IPR004000 -
Tsu07g03477 378 PRINTS Actin signature 52 63 IPR004000 -
Tsu07g03477 378 PRINTS Actin signature 239 255 IPR004000 -
Tsu07g03477 378 PRINTS Actin signature 64 86 IPR004000 -
Tsu07g03477 378 PRINTS Actin signature 29 38 IPR004000 -
Tsu07g03477 378 SUPERFAMILY Actin-like ATPase domain 150 378 IPR043129 -
Tsu07g03477 378 PANTHER ACTIN 4 377 IPR004000 -
Tsu07g03477 378 SUPERFAMILY Actin-like ATPase domain 7 156 IPR043129 -
Tsu07g03477 378 ProSitePatterns Actins signature 1. 56 66 IPR004001 -
Tsu07g03477 378 Gene3D Actin; Chain A, domain 4 183 274 - -
Tsu07g03477 378 Pfam Actin 6 378 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03477 Tsu-Chr7 40992360 40995004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03477 3 378 Cytoskeleton Gene Families AT5G09810 95.745 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03477 K10355 - gmx:100807341 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03477 07 40992360 40995004 Tsu07g03477 07 40992360 40995004 ECH
Tsu07g03477 07 40992360 40995004 Tsu01g01964 01 19920938 19924282 PCT