Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03460 atgagAGAAGTTTGGAATATAGGAACATGTAATCAACAACTATCAATAGttgaagaaggagaaggagaaTCAACAAAATCTTCAAATACAAACACAATTATGAGTCGTTTTGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAATTGCATGGGATTTGCAGAATTTGATAACCAAGttgataatcataataataatccaTCTTTGAGTTCTCAATTATATAAGCTTAATGATTTGGAGTTCCCTTTGTATCAATCTCTAAGGGAAAATAATCATTTCTTGGAATCATCAAACCAACTTGATCCTAACTTTGAATTTTCAAACACTTTGCAAGCATTGGTTAAATCTCAATGGAATGGTAATCAATGCCTTAGATTGCCAGAAAACTCGAGTCAATTTTCGTGTGAGAATTTTCCCCGGATTAAGTCCTTTCCGATTGAAcaacaaaagttgttttttgATGGTCTTGCCTCAAGTAGCAACAGCTCATCATTTTGTAACAAAGGAAATCATGACTATATGGTTGGTCGAGGATCTTATCATTTATCTGTCGAGCAACTGAATTTCGCTTCTCATCATGAGAAGTTGTGTCCAACAATTTCAGCTGGAAGTTCATCAACTTCTCTTGGAAACACTACTTCTAGTGGGAATGTAGTCTCGAGTAAAACACGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATTGCCTCGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAAGATGATGGATTCTGATGTTTTGACCATATTCCATGTGAAAAGTCATTTGCAAAAATATAGAACTGCAAAATTCATGCCAGAGTCAGTTCAagGTAAATCTGACAAAAGAATCCATACAGAGGATCTGCATCATGTTGGTGTTAAAACTGGATTTCAAATCAAGGAAGCACTTCAACTTCAATTAGAAGCACAAAGGCGTCTTCATGAACAACTCGAGATTCAACGAACGTTACAATTGCGACTTGAGGAACAAGGCAGAGAGctgaaaaaaatgtttgatcaGCAACAGAAGACATGTAATAACCTCTTCAATACTCCAAATACAGTCAATGATGATAGTGCAAAAATTAGTCACAAAGATGCTGAGGTTTCTATTTCTAAAGGGACTGAGAATTCATAA 1164 0.3368 MREVWNIGTCNQQLSIVEEGEGESTKSSNTNTIMSRFESPASAFYATENCMGFAEFDNQVDNHNNNPSLSSQLYKLNDLEFPLYQSLRENNHFLESSNQLDPNFEFSNTLQALVKSQWNGNQCLRLPENSSQFSCENFPRIKSFPIEQQKLFFDGLASSSNSSSFCNKGNHDYMVGRGSYHLSVEQLNFASHHEKLCPTISAGSSSTSLGNTTSSGNVVSSKTRIRWTKDLHEKFVECVNCLGGAEKATPKAILKMMDSDVLTIFHVKSHLQKYRTAKFMPESVQGKSDKRIHTEDLHHVGVKTGFQIKEALQLQLEAQRRLHEQLEIQRTLQLRLEEQGRELKKMFDQQQKTCNNLFNTPNTVNDDSAKISHKDAEVSISKGTENS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03460 387 Pfam MYB-CC type transfactor, LHEQLE motif 307 353 IPR025756 -
Tsu07g03460 387 Gene3D - 221 280 - -
Tsu07g03460 387 MobiDBLite consensus disorder prediction 358 387 - -
Tsu07g03460 387 Coils Coil 309 329 - -
Tsu07g03460 387 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 25 387 - -
Tsu07g03460 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 222 277 IPR006447 GO:0003677
Tsu07g03460 387 SUPERFAMILY Homeodomain-like 220 276 IPR009057 -
Tsu07g03460 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 387 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03460 Tsu-Chr7 40909161 40911369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03460 209 382 G2-like Transcription Factor Family AT4G28610 48.864 2.66e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu07g03460 Myb_CC_LHEQLE 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03460 - - cam:101504038 546.584