Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03455 ATGGATATTCGCAAAAGAGGAAGACCCGAACATGGATTCAATACCAATGGTGGATTCAAGAAATCAAGACatgAAATGCAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCCTTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGTGGTTATAATGCTGCTGCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTGCACCCCCACCACATGTACCCAATGGGTCCGCGCCATCTTCTGTTAAAAGCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGTGAATGGGAACTTGGGAAGCCTGTTGCTCTGTCATTTGATGATCACCGTGGCATGGGACCACCCAACGTAGGTCGTTTTGGTGGCCATCGGATGGAGCCCCCTCCTGGTCCAACTACCAGCTTCGGTGCCAATGCCACTGCCAAGATCAGCGTAGAAGCTTCTCTGGCTGGAGCAATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAACTTGCAATTCGAGAGCATGAAGCTGATCCAAATCTTAGGAACATTGAACTTGAGGGAACTTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGTTGACCCTTCAAATGTCTGCACCACCTAAAACATCccaaggaggaggaggaggggGAGGCCCTGGTGGCGCCCCTGGTCATCATGGAAGCAACTTTAAAACAAAACTGTGTGAGAATTTTGCGAAGGGATCTTGCACTTTTGGAGACAGATGTCATTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 900 0.4611 MDIRKRGRPEHGFNTNGGFKKSRHEMQSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAAAQMMNLTPAAPPAPRNVAPPPHVPNGSAPSSVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRGMGPPNVGRFGGHRMEPPPGPTTSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHEADPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTSQGGGGGGGPGGAPGHHGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03455 299 Gene3D K Homology domain, type 1 165 266 IPR036612 GO:0003723
Tsu07g03455 299 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 299 - -
Tsu07g03455 299 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 299 - -
Tsu07g03455 299 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Tsu07g03455 299 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Tsu07g03455 299 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Tsu07g03455 299 Gene3D - 94 131 - -
Tsu07g03455 299 Gene3D - 267 299 - -
Tsu07g03455 299 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Tsu07g03455 299 MobiDBLite consensus disorder prediction 20 34 - -
Tsu07g03455 299 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Tsu07g03455 299 SUPERFAMILY CCCH zinc finger 267 298 IPR036855 GO:0046872
Tsu07g03455 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Tsu07g03455 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Tsu07g03455 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 60 IPR000571 GO:0046872
Tsu07g03455 299 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Tsu07g03455 299 MobiDBLite consensus disorder prediction 243 264 - -
Tsu07g03455 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 241 IPR036612 GO:0003723
Tsu07g03455 299 CDD KH-I 171 234 - -
Tsu07g03455 299 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Tsu07g03455 299 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Tsu07g03455 299 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Tsu07g03455 299 MobiDBLite consensus disorder prediction 1 34 - -
Tsu07g03455 299 Pfam KH domain 172 234 IPR004088 GO:0003723
Tsu07g03455 299 SMART kh_6 168 238 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03455 Tsu-Chr7 40860397 40863723 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu07g03455 KH_1 2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03455 - - mtr:MTR_7g093130 520.776