Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03447 ATGAAggatttgaagaagaaaagaaaaatagatgAGGCAGGAAGCAGTAACTTGGATTCCAAGGAAGAAGAACTTAGACTTCTCATGGAACCTCTTGCCAAACCTGTACTCGTTAATCTTCTCTCTAAACTAGGTTCCAAAGATCCTGCAATTGCAGAAGAAATAGAAACTATTGCATATGCTGATTCTGTCCATAGAAGGATTTTTGTTCGTGACTTGTCCTTGAATACCACTTCAAAATCTTTGCGTAATgcATTTAAAGAGTATGGAGAAATTGAGGAAGGGAAAGTGGTTTTTGATAAACACATTCGAAAATCTTGTAGATATGGATATATTCTTTACAAAGATGTGAAATCGGCTAAGAAAGCATTGTGTGAACCTAGCAAGTTAATCGATGGAAGATTGACTCTATGTATGTTAGCTAGTGATGAGGTCACAAGAAAAATTAGTGATACTACCCAGAGAAAGCTTTTTGTTGGAAACTTATCACCGCAAGTAACAAACGGAACGCTGTACAGCTATTTTAAGGGGCATGGTGATATTGAGGAATGTTCAGTTGCATATGAACGTCACAAGGATTCAAATGCATCACGTGGATTTGGCTTTGTTACATACAAGACAGCAGAGGCTGCAGGAAAAGCCTTAGTTGACCTACATAACAAGACTCTTGAGGGAAGACATATAAATGTACAATATGCTAATCCCTACAAGGGTAAAGGTGGTCAGTCATCTGCTCCTCCAAAGGCAGCCTTACCTGTGCCTCCAAGATATGTTGAAGGTTATCCCCGTGAGGGTGGAGGTGGTCAGTCGTCTGTTCCTCCAACGGCAGCCTTACCTGTGCCTCCAGGATATACATACCCCCAAACTGCTGCACCTCCTTATCCATACCCTCAAACAGCTCCACCATCTTATCCATACCCTCAAACAGCTGCACCATATGCTGCATCTCATTATCCAAGTCTTCGCCCTGGACCTTCTACTTCTCGAACATATGGTTATGGACAGAATCCTTATCCTCCGAATTACTATCAAAACCAATGA 1041 0.4025 MKDLKKKRKIDEAGSSNLDSKEEELRLLMEPLAKPVLVNLLSKLGSKDPAIAEEIETIAYADSVHRRIFVRDLSLNTTSKSLRNAFKEYGEIEEGKVVFDKHIRKSCRYGYILYKDVKSAKKALCEPSKLIDGRLTLCMLASDEVTRKISDTTQRKLFVGNLSPQVTNGTLYSYFKGHGDIEECSVAYERHKDSNASRGFGFVTYKTAEAAGKALVDLHNKTLEGRHINVQYANPYKGKGGQSSAPPKAALPVPPRYVEGYPREGGGGQSSVPPTAALPVPPGYTYPQTAAPPYPYPQTAPPSYPYPQTAAPYAASHYPSLRPGPSTSRTYGYGQNPYPPNYYQNQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03447 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 228 IPR000504 GO:0003723
Tsu07g03447 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 130 IPR000504 GO:0003723
Tsu07g03447 346 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 338 - -
Tsu07g03447 346 Gene3D - 146 271 IPR012677 -
Tsu07g03447 346 MobiDBLite consensus disorder prediction 321 346 - -
Tsu07g03447 346 MobiDBLite consensus disorder prediction 234 346 - -
Tsu07g03447 346 Gene3D - 58 145 IPR012677 -
Tsu07g03447 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 235 IPR000504 GO:0003723
Tsu07g03447 346 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Tsu07g03447 346 MobiDBLite consensus disorder prediction 275 308 - -
Tsu07g03447 346 SMART rrm1_1 156 231 IPR000504 GO:0003723
Tsu07g03447 346 SMART rrm1_1 67 139 IPR000504 GO:0003723
Tsu07g03447 346 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 13 338 - -
Tsu07g03447 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 152 IPR000504 GO:0003723
Tsu07g03447 346 SUPERFAMILY RNA-binding domain, RBD 146 244 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03447 Tsu-Chr7 40791301 40793430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03447 151 215 C2H2 Transcription Factor Family AT2G19380 40.000 3.16e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03447 K12741 - gmx:100776344 275.404