Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03445 ATGATCGATTTTAGAAAACTCAGATTAACATTCACATTTTTCAATTTCACCCAAAATCGCACCATTCTTAAACCCTCACTAAACCCTAGATTTTACAGCATAGGAAATTCCCCTCAATTAGATGCAAAACCGAAACTTCGCTCAAAATCAGCGATCAAAGAAGCTCAATCTGCATTGCTAGAGTATCTTCATTCCACAAGAAGCTTACAATTCTTAGACGCAGATAACATGTGcaaaaattcaccttttttccttcaaaatctcgttgaaaaaaccctaaaaaacgaGAATACGGTTAACATAAAAAGGTTAATTTCTCGTTACTTGCGTTACCATCCTATTAACGAATTCGAACCCTTTTTCGAGAGTTTGGGTTTGAAGCCTTCTGAATATGCACCATTGCTTCCTCGAGGTTTGATTTTTCTTAACGATGATCCTCTTTTGATGGAGAATTATCATACTTTGTGTAATTATGGGGTTCCTCGATCCAAAATggggaaaattttcaaattagcGCCTCAAGTTTTAAGCTTTGAAAATGGGGTTTTGAATTTGAAGCTTAAGGCTTATGAAAATTTGGGTATTTCACCTTCTGTTTTGGTGAATGCTGTTGCTGTAAGTCCATGTCTTTTGGTTGGTgatgttaattttgaatttgttaagGTTGTGGAGATTTTGAAGAGTATTGTTTCTAAGGGTGGTGATGGTGATATTGATAGTGGTTTGATTCAGTGGCATTTTTTGGATGAGGCTTCTTGTAAGTGGGGTTTAATGCTTGAGCTTTTGTGCTTGCTTTCTGATAATGTTGGTTTCAGTGAGGAACAGTTGGTTGAGATTATTCGTCGTAGTCCTTGCGTTGTTTTTGAGGAATCGGGAGGTAAGACACTCTCTATGATTGGCTTTTTGACTAAATTTGGATTGTCTGCGAACCAGATTGCACCTGTGTTTCTCGAGTTTCCGCAGATTCGGATGGTCAAGTTTTTTGCTAACTTGAGGATGTGTTTTCAGCTTTTGACTGAAATTGAGATGGAAGCTGCAGAGATTGGAAAGATTTTCCAGTCTCATACATTATTTGTGGGTTCCGCCACTCTCAAAACTACAAAGAGTTTGCTTGGCTGCTTGAATGTCGGCAAGAAACGTCTCTGTCGCATTGTGCAGGATAATCCTTTTGTAATGAAGAATTGGGTTCTGGGAAAGAGAGTTAAGCCTTTGGTTAGCATAAGGGAGGCAGAAGAGGAGAAATCGAAGGCGGGGAAGATAGAGTTCTTGTTGCGGTTAGGATATGTGGAAAACACGAAACAAATGAATTCGGCATTTAAGATATACAGAGATTCTCAATCAAAACACAGATACGGTCAAGATGAAGATCGAGTATCTTGTAAAACAAGGATATTCTGTATCAGATTTAATGGGAATGTTAGCTTGATATGCCATCTTCAATCTGAAATTGCAACTTCTAGAACTCGCAATTGA 1473 0.3612 MIDFRKLRLTFTFFNFTQNRTILKPSLNPRFYSIGNSPQLDAKPKLRSKSAIKEAQSALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVEKTLKNENTVNIKRLISRYLRYHPINEFEPFFESLGLKPSEYAPLLPRGLIFLNDDPLLMENYHTLCNYGVPRSKMGKIFKLAPQVLSFENGVLNLKLKAYENLGISPSVLVNAVAVSPCLLVGDVNFEFVKVVEILKSIVSKGGDGDIDSGLIQWHFLDEASCKWGLMLELLCLLSDNVGFSEEQLVEIIRRSPCVVFEESGGKTLSMIGFLTKFGLSANQIAPVFLEFPQIRMVKFFANLRMCFQLLTEIEMEAAEIGKIFQSHTLFVGSATLKTTKSLLGCLNVGKKRLCRIVQDNPFVMKNWVLGKRVKPLVSIREAEEEKSKAGKIEFLLRLGYVENTKQMNSAFKIYRDSQSKHRYGQDEDRVSCKTRIFCIRFNGNVSLICHLQSEIATSRTRN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03445 490 Pfam mTERF 268 427 IPR003690 GO:0003690|GO:0006355
Tsu07g03445 490 Gene3D Transcription termination factor 3, mitochondrial 294 453 IPR038538 -
Tsu07g03445 490 Gene3D Transcription termination factor 3, mitochondrial 55 233 IPR038538 -
Tsu07g03445 490 PANTHER CGI-12 PROTEIN-RELATED 35 444 IPR003690 GO:0003690|GO:0006355
Tsu07g03445 490 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03445 Tsu-Chr7 40780846 40783305 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu07g03445 mTERF 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03445 - - lja:Lj1g3v4317450.1 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03445 07 40780846 40783305 Tsu07g03445 07 40780846 40783305 ECH