Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03442 ATGGCTTTCTGTAACAAGATCGGAAACCTGTTAAGGCAAGGTGCTTCTCAGAGCAACCAAGCCGCTCCTTCATCCATGCTTAACTACCTTCGTCATATGTCTTCAAGCAAGCTTTTTATTGGAGGTCTTTCTTATGGAATTGATGATCAATCTCTTAGGGATGCATTTGCAAGCTATGGAGAGGTGGTTGAGGCAAGAGTTATCACTGATAGAGAAACTGGAAGATCAAGGGGATTTGGATTTGTCGGTTACACTTCTGAGGATGCTGCTACTTCAGCACTAGCTATGGATGGCCAGGATTTAAATGGCCGAAACATTCGTGTGTCTTATGCAAATGATAGACCTTCTGGTGGTGGCGGCAggtttggtggtggtggtggctaTAATGACAATTTTTCTAAGAACGGCGGTGGCGGCGGCGGTTGGTGA 429 0.4289 MAFCNKIGNLLRQGASQSNQAAPSSMLNYLRHMSSSKLFIGGLSYGIDDQSLRDAFASYGEVVEARVITDRETGRSRGFGFVGYTSEDAATSALAMDGQDLNGRNIRVSYANDRPSGGGGRFGGGGGYNDNFSKNGGGGGGW 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03442 142 SUPERFAMILY RNA-binding domain, RBD 29 141 IPR035979 GO:0003676
Tsu07g03442 142 SMART rrm1_1 37 109 IPR000504 GO:0003723
Tsu07g03442 142 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 139 - -
Tsu07g03442 142 MobiDBLite consensus disorder prediction 112 142 - -
Tsu07g03442 142 Gene3D - 12 142 IPR012677 -
Tsu07g03442 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Tsu07g03442 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Tsu07g03442 142 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03442 Tsu-Chr7 40764634 40765482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03442 9 119 C2H2 Transcription Factor Family AT2G19380 27.027 5.32e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03442 - - gmx:100527220 189.119