Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03441 ATGGATTCAGGCAACTCTTCTTCAGAAGAGTCTTCTCTAAATGGCTTAAAATTTGGCCAAAGAATCTATTTTGAAGACATGGCTCTTCCAAATGCAAACTCCTCCTCTGTGGCTAATAATGCTTCTTCTGGTTCAAGTTCAAAGAAAGTAAAAAGTGTATCAGTTCAACATTCTCAACCTCCTAGGTGTCAAGTTGAAGGATGTAAACTAGATCTGACTAATGCTAAAGCTTACTATTCTAGACATAAAGTTTGTTCCATGCATTCTAAATCTCCTACTGTCACTGTTTCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAACGAGCGTCGTAGAAAGCCCCCACCTAACTCTCTCCTCACCTCGCGTTTTGCCAGACTTTCTTCATCTGTTTTTGATAACAGCGGCAGAGGTGGCAGCTTCCTGATGGAATTTGATTCACACCAGAAACTTAGTCTGAAAAATGCACTTCCGTCGCATGGAAATCAAACCACAATACTCGGTTGGCCTTGGCCGGGTAACTCGGAGTCGCCATCTGACAACCTTTTCTTGCAAGGTTCAGTGGGCGGGACAAGCTTTGCTGGTGGGAGGCATCCTGCCGAGGAAAATTACACTGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTTCTAGAAACACAGCAACAAGTCACGGATTGAACACCATGCTGAATTTCAATAACGGGACACCCATGACACAACTTGCTACATCATCTCATGGTGTAGCCATGCATCAACTTCCGAACAGTTCATGCTGTTTCAAGGACATTGATCACAGTAACCTTTCACACGAGGCTGTTCCTGATCATGGTCTAGGTCATACTTCACAGCCTCCTGATAACCAACTTCGTGGTGAGCTTGATCTGTTGCAGCAGGAAAGGAGGCATTATATGGATGTAGAACACTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTAA 1053 0.4406 MDSGNSSSEESSLNGLKFGQRIYFEDMALPNANSSSVANNASSGSSSKKVKSVSVQHSQPPRCQVEGCKLDLTNAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPNSLLTSRFARLSSSVFDNSGRGGSFLMEFDSHQKLSLKNALPSHGNQTTILGWPWPGNSESPSDNLFLQGSVGGTSFAGGRHPAEENYTGVTDSSCALSLLSNQTWGSSRNTATSHGLNTMLNFNNGTPMTQLATSSHGVAMHQLPNSSCCFKDIDHSNLSHEAVPDHGLGHTSQPPDNQLRGELDLLQQERRHYMDVEHSRAYESSQWSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03441 350 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Tsu07g03441 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 347 - -
Tsu07g03441 350 Pfam SBP domain 63 136 IPR004333 GO:0003677
Tsu07g03441 350 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Tsu07g03441 350 MobiDBLite consensus disorder prediction 301 320 - -
Tsu07g03441 350 MobiDBLite consensus disorder prediction 34 58 - -
Tsu07g03441 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 347 IPR044817 GO:0003677
Tsu07g03441 350 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03441 Tsu-Chr7 40755642 40758417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03441 16 350 SBP-box Gene Family AT2G42200 42.667 1.65e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu07g03441 SBP 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03441 07 40755642 40758417 Tsu07g03441 07 40755642 40758417 ECH
Tsu07g03441 07 40755642 40758417 Tsu01g01945 01 19662963 19666557 PCT