Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03420 ATGGCGTACGCTAAACCAACAAAACCTGGTTTGGAAGAATCACAAGAACAGATCCACAAAATTAGGATCACCCTTTCCTCCAAGCATGTCAAAAATCTCGAAAaggtTTGTGCTGACTTGGTTCGTGGTgctaaggataagcatcttagAGTGAAGGGTCCTGTTAGGATGCCAACTAAGGTTCTTCATATCACTACTAGGAAGACCCCTTGTGGTGAAGGTACCAACACCTGGGACAGATTTGAACTCCGGGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCAGATGTTGTTAAGCAGATTACCTCTATCACCATCGAACCTGGTGTCGAGGTTGAGGTGACCATTGCAGATGCTTGA 363 0.4298 MAYAKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03420 120 Hamap 30S ribosomal protein S10 [rpsJ]. 18 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tsu07g03420 120 Gene3D Ribosomal protein S10 domain 4 119 IPR036838 -
Tsu07g03420 120 SUPERFAMILY Ribosomal protein S10 20 117 IPR036838 -
Tsu07g03420 120 PRINTS Ribosomal protein S10 family signature 20 33 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tsu07g03420 120 PRINTS Ribosomal protein S10 family signature 55 70 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tsu07g03420 120 PRINTS Ribosomal protein S10 family signature 77 91 IPR001848 GO:0003735|GO:0005840|GO:0006412
Tsu07g03420 120 PANTHER RIBOSOMAL PROTEIN S10-RELATED 3 119 - -
Tsu07g03420 120 SMART Ribosomal_S10_2 22 116 IPR027486 -
Tsu07g03420 120 Pfam Ribosomal protein S10p/S20e 22 116 IPR027486 -
Tsu07g03420 120 TIGRFAM uS10_euk_arch: ribosomal protein uS10 19 117 IPR005729 GO:0003735|GO:0006412|GO:0015935
Tsu07g03420 120 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03420 Tsu-Chr7 40600584 40602820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03420 1 120 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 88.525 2.42e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03420 K02969 - gmx:100500017 231.491