Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03409 ATGGAACAACAACCTACTGAATCCATTCACGCACTCGATTCCGTTCAATTTAACGAAGAAATTCAAGGAATTATGGTTCCAGCACCTGCACCGGAAAACGCAAGCTCATTCACAGCGCTACTCGAGCTTCCGCCGACGCAGGCTGTTGAGCTACTTCATTTACCGGATTGCGACGGAACTAATTCCCGGAGATTATCTTGTTGCCACGTCAGCGTGAATCAGAAACCCTATCTTCCGATTTCTTCCAACGGTAATTTAACTTTTCCTACTAACGCTGCGTTAATTGAACGCGCTGCGAAATTCTCAGTGTTTGCTGGAGATAATACTTCACCGGGAGAGATGCGGTTGTTTCCGGCGGTGTCTGGACCGAATTTAGAAACTGTGAAGAACGAGCCACAAGAGACGGATTCGAATCCTTGTTCGACGCAAGAGTGTGTTTCGGATCCAGCTATTGAGAATAAGAATCAGAGAAACGTCAAGAGAAAAGAGCGGGAGAAGAAGGTTAAACCGTCGTCAAAGAAGAGTAAGAGAGTCGCTGATGAAACCTCCGGTGGCGGTGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGACGGGGTCAAGCTACAGATAGCCATAGCTTAGCAGAACGAGCTAGGAGAGAGAAGATTAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAgATATCTGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCAAACTCTTCAACGTCAAGTGGAGGTTAGACTCTTCACACTGCAAACACTttacattaatatatattttcacaatCAAGAGGCTATACATGTTTATTATTGTCTGTTTGGTTCTCGACTAATAATGAATTATGCATAG 879 0.4448 MEQQPTESIHALDSVQFNEEIQGIMVPAPAPENASSFTALLELPPTQAVELLHLPDCDGTNSRRLSCCHVSVNQKPYLPISSNGNLTFPTNAALIERAAKFSVFAGDNTSPGEMRLFPAVSGPNLETVKNEPQETDSNPCSTQECVSDPAIENKNQRNVKRKEREKKVKPSSKKSKRVADETSGGGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEVRLFTLQTLYINIYFHNQEAIHVYYCLFGSRLIMNYA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03409 292 Pfam Helix-loop-helix DNA-binding domain 204 251 IPR011598 GO:0046983
Tsu07g03409 292 MobiDBLite consensus disorder prediction 126 153 - -
Tsu07g03409 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 264 IPR036638 GO:0046983
Tsu07g03409 292 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 262 IPR024097 GO:0006355
Tsu07g03409 292 Gene3D - 197 263 IPR036638 GO:0046983
Tsu07g03409 292 SMART finulus 206 256 IPR011598 GO:0046983
Tsu07g03409 292 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 262 - -
Tsu07g03409 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
Tsu07g03409 292 MobiDBLite consensus disorder prediction 116 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03409 Tsu-Chr7 40496453 40502613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03409 11 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.846 4.38e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g03409 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03409 - - gmx:100814124 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03409 07 40496453 40502613 Tsu07g03409 07 40496453 40502613 ECH
Tsu07g03409 07 40496453 40502613 Tsu01g01916 01 19232834 19238149 PCT