Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03401 ATGTGGAGACGCCCTGGTAAAAAGCATCTCAATCTTGAAACAAAGCTTCCCACATCCACCGTATTCTCCTGCAACTCAACAGCAATGAATAAGAGCTCCAAAGAATTCAAGATTCAGTTACCTGATTGTGTTATATGGAATATCTTTTCAAAGTTAGGTTTAAAAGATTTGGTGAAAACTAGTACATTGTCCAAACTATGGCTTCACGAATGGCAATTCAGAAAGGATCTCAATTTTGATCTCTGTAACTTGTTTGATTATAATAAAGTTCAAGAATTACCAAAAAACTTTCCATCTGAATTTGCTACAAGATTGGATCAATTCATGCTACATTATCAAGGTGACATGATCGATTCAATCCGAGTTAAATGTCCGTTAAGTTATGAACATAGTGATGTCATTAAGAGATTGATTTCAAAAGGAATTGCTAAGGGTGCCAAACGTATTGAACTGCTATTGTCATATGGAAATAATGATATACGAAAGGAGCCATGTGAATTTTCATTTGAACTCTTATTTGGGACTGATTCTCTGACATATCTGCATCTACAGAACTTCCGTCTAAAAACACCGATGGAATTTTCTGGATTGAAGAATTTGAGAACTCTTGTGTTACAACTGGTTGCTGTGAGGCAGACTTGGCTTGAAGGTCTGTTTTCCAACTGCATCCATCTTGTAGACTTCACTATTGATGAATGTGCTTTCATGTCTGACTTGAAAATAATCAGTTCAACATTATTTCGTTTAAACATTGTTAACTGTCGGGTTAACGTTAATAGGAGCAATATAGATATCATTGCATCGAATCTCTCATCCATGGAATATTCTTCTAATGATGATTATTCTGTACACAGAATGAACATTGAGGCTCATATGTTATCCAAGTTTAGCTACAAAGgttgtaaaatatataaaccTGTTGGATTCTCTGGATTGAAAAATGTGACAACAATTGTGCTTGATGGACTCCGTGAATTGCAACGTACTAACATCGTGCATCTTCTGTTTTCTGAATGTCTCCAACTCGAGGACGTTACCTTTATGAACTGTAACCAAATACATGACATGAATATTGTCAGTTCAAAGTTGCGTCATTTGAAAATAATTGGAAGTGTCTATAACCAGTGCATAGATATTAATACGTTGAATCTTGCATCCTTTGAATATAGTGGTAAGACCATGAGAAACATCTCTGTTACGGCTCCAAGGTTATCGAGGGTTTTTTGGAATGCAGCTATAAGAGAGAATATTCCACATCCCTTTGGGCCAATTATAACAACATTACAACATATTGAGAATTTAGCTATGATAATCAGCACTTCACAGGTAGCAAAATTAACGGAGGTCTTGGTTCAATATCAAAATCTTAGACAATTGGAATTATTTATCGAGGGAGCATATGATCCTAATATGgactatttttggattttagaTATTGCAATGACATCTCTACATCTCCAAAAACTTTCTCTTACGatTAGAAATCTACATTTGGAAAATTTACACATGGTTGGATTTATGAGGCAGAGAAAAGAATATGCAAAGTTTtctcacaatgatttgaaataTGTAGAGTTACGTGGTTGTGTTTGCTCCACAAATGTAATTGAGTTCGCTAGTTGCCTATTAAGGAATGCAAAATCACTTAAGCAAGTTACTTTCGGTTCTCATGACAAATTCTACATTGGTGCTGGTAGATGGACTAATGACTCTGATgATCCCGAGAATATGACTCCTACCTATGGTTGTATAACTTGCACTTGTGGTCCTTCCTGTGGTGATCGTAAATCACCTCCACCGGATTATTATCCAGCTTTTTTTCCCCTTCCGGGCAATCATTTGATACCTAACCTCCATTGGCCTATTGTGGAGGAGTTGAATGCTAAGTCTGATGATAAAACTCTTATGGTAACCAATATCACCCATGAACTAAACAACAAGGACACTGATTTCCTTAACCTTTTCAAGCCTTTTGGTGAGGTCTGCAGTGCCACTCTTGCCCCTGCTACTAGAGATCTTCGCATTCGTGGGGGATATGGCTTTGTTACCTTTGTCAACAAGGAAGATGCTCAGAAGGCTATGGACACACTCAATGGCTCTGCCGAGCTTGGCGGGGATAAAGGCACCCTTGCAGTTAATTGGGCCTCTGCCATAAAAAAACCagcttatatataa 2175 0.3646 MWRRPGKKHLNLETKLPTSTVFSCNSTAMNKSSKEFKIQLPDCVIWNIFSKLGLKDLVKTSTLSKLWLHEWQFRKDLNFDLCNLFDYNKVQELPKNFPSEFATRLDQFMLHYQGDMIDSIRVKCPLSYEHSDVIKRLISKGIAKGAKRIELLLSYGNNDIRKEPCEFSFELLFGTDSLTYLHLQNFRLKTPMEFSGLKNLRTLVLQLVAVRQTWLEGLFSNCIHLVDFTIDECAFMSDLKIISSTLFRLNIVNCRVNVNRSNIDIIASNLSSMEYSSNDDYSVHRMNIEAHMLSKFSYKGCKIYKPVGFSGLKNVTTIVLDGLRELQRTNIVHLLFSECLQLEDVTFMNCNQIHDMNIVSSKLRHLKIIGSVYNQCIDINTLNLASFEYSGKTMRNISVTAPRLSRVFWNAAIRENIPHPFGPIITTLQHIENLAMIISTSQVAKLTEVLVQYQNLRQLELFIEGAYDPNMDYFWILDIAMTSLHLQKLSLTIRNLHLENLHMVGFMRQRKEYAKFSHNDLKYVELRGCVCSTNVIEFASCLLRNAKSLKQVTFGSHDKFYIGAGRWTNDSDDPENMTPTYGCITCTCGPSCGDRKSPPPDYYPAFFPLPGNHLIPNLHWPIVEELNAKSDDKTLMVTNITHELNNKDTDFLNLFKPFGEVCSATLAPATRDLRIRGGYGFVTFVNKEDAQKAMDTLNGSAELGGDKGTLAVNWASAIKKPAYI 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03401 724 Gene3D Ribonuclease Inhibitor 50 558 IPR032675 -
Tsu07g03401 724 Gene3D - 624 721 IPR012677 -
Tsu07g03401 724 Pfam F-box domain 39 68 IPR001810 GO:0005515
Tsu07g03401 724 SMART rrm1_1 634 713 IPR000504 GO:0003723
Tsu07g03401 724 SUPERFAMILY F-box domain 38 84 IPR036047 GO:0005515
Tsu07g03401 724 PANTHER EXPRESSED PROTEIN 36 547 - -
Tsu07g03401 724 PANTHER F-BOX PROTEIN-LIKE 36 547 - -
Tsu07g03401 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 633 717 IPR000504 GO:0003723
Tsu07g03401 724 SUPERFAMILY RNA-binding domain, RBD 604 715 IPR035979 GO:0003676
Tsu07g03401 724 SUPERFAMILY RNI-like 153 547 - -
Tsu07g03401 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 635 705 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03401 Tsu-Chr7 40438042 40447390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03401 625 716 Eukaryotic Initiation Factors Gene Family AT5G06000 34.783 5.86e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03401 - - mtr:MTR_6g013240 638.262