Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03400 ATGTCTAAATTCTGTATATACCTgttcttctttctttccttaACCTTTTCATCAATCTTCAAACTcacttcatcatcttcatcagaatTTCAAACCCTTCTTTCTTTCAAATCCACCATTCAAGACACCAAAAACACTTTATCAACTTGGTCAAACACTTCTCAAACCCATTTCTGTAACTGGACTGGTatctcttgttcttcttcttcttcttcactctcAGTAACTTCTGTTAACCTTCAAAGCTTAAACCTTTCTGGTGATATCTCTTCTTCCATTTGTGACCTTCCAAATCTCTTTGATCTTAATCTTGCTAATAATGTTTTTAACCAACCTattcctcttcatctttctcAATGTAGTTCATTGAAAAGTTTGAATCTTAGTAATAATCTTATTTGGGGTACTATCCCTTCTCAGATTTCactttttgtttcattatctgTTCTTGATTTGAGTAGAAATCATATTGAAGGAAATGTTCCAGATACTTTAGGTTCATTGAAGAATCTTCAAGTGCTTAATATGGCTAGTAATTTACTTTCTGGTGATGTACCTAAGGTGTTTGGTAATTTGACTAAGTTAGAAATTCTTGATTTTTCTGAAAATCCTTACTTGGTTAGTGAGATTCCAGAGGATATTGGTCAGCTTGTGAATCTAAAGCAACTTTTTTTGCAAAGTTCTTCTTTTCAAGGTGAAATTCCTGAGTCTTTGAAGGGTTTGATTAGTTTAAGTTATTTAGATCTTTCTGAGAATAATCTAACTGGTGAAGTTCCTAAGACACTTGTGAGTTCTCTTAAGAATCTTGTTTCTTTTGATGTTTCACTAAATAAGCTTAAAGGGTCATTTCCAAATGGTTTGTGTAATGGAAAAGTGCTTATAAATTTAAGTCTTCACACAAATAGTTTCACTGGTTTAATACCAAATACAACTAGTGAGTGCAAGAGTCTTGAGAGATTTCAAGTTCAGAACAATGGTTTCTCCGGTGATTTCCCTGTTGTGTTATTTTCACTTCCTAAAATTAAGCTCATTAGAGGTGAAAACAATAGATTCACAGGACAAATACCTGAGTCAATATCAGAAGCTGTTCAGTTAGAGCAAGTTCAGCTTGATAATAATCTTTTTGATGGTAAAATTCCTTCAGGTCTTGGTTTTGTTAAAAGCTTGTACAGATTTTCTGCTTCTCTTAATCATTTCCATGGTGAAATTCCTCCTAATTTTTGTGATTCACCAGTTATGAGTATAGTGAATCTCTCTCACAATTCTCTTTCTGGTCATATACCTCAGCTGAAAAAATGCAGGAAACTAGTTTCACTTTCTTTAGCTGATAACAGTTTCACAGGAGAAATTCCTTCTTCTCTAGCTGAGTTACCTGTGCTTACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATTCCATTAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTTTCCTTTAATCAGTTATCAGGCAAAGTACCATACTCTTTGATATCTGGTCTTCCTGCATCATTTTTGGAAGGTAATCCTTCTCTTTGTGGTCCCGGATTGCCGAATTCATGTTCTGATGACAAGCCAAGACACCATTCTGCTTCTGGTCTTACAACCTTGACATGTGCTTTGATCTCTCTAGCATTTGTTGCTGGAACTGCTCTTGTTGCTGGTGGATTTATATTGTATAGGAGATCTCTTAAAGAAAATGAAGCTGTTGTGTGGCGATCGGTGTTTTTCTATCCTCTGAGAATTACTGAGCATGATCTTGTTATAGGGATGAATGAGAAAAGCTCAATAGGAAATGGAGTTTTTGGTAATGTTTATGTTGTGAGTTTACCTAGTGGTGATTTAGTATCTGTGAAGAAGTTGGTTAAATTTGGAAACCAGTCTTCAAAGAGTTTGAAAGTTGAGGTCAAAACTTTGGCTAAAATTAGGCATAAGAATATTGTTAAGATTCTTGGGTTTTGCCATTCTGATGAgtcaatttttcttatttatgaaTACTTGCATGGTGGAAGCTTAGGAGACTTGATTTCTAGTCAGGATTTTCAGTTGCATTGGGGAGTTAGATTAAGGATTGCTATTCGAGTTGCTCAAGGACTTGCATATCTTCACAAGGATTATGTACCGCACTTGGTTCATAGAAATGTCAAGTCAAAGAACATTCTGTTAGATGTTAACTTTGAGCCAAAACTTGCACATTTTGCTCTTGATAGGATTGTTGGAGAAGCTGCATTTCAATCAACTTTGGATTCCGAATCTGCATCTTCTTGTTACATTGCTCCAGAATATGGTTACAACAAAAAAGCAAGTGAACAATTGGATGTGTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTTTGTGGAAGACAAGCAGAGCAAACAGATTCAAGTGACTCTTCACTTGACATAGTGAAATGGGTTAGAAGGAAAGTGAACATTACTAATGGAGTGCACCAAGTTCTTGACAGTAAAATATCACAAACTTGTCACCAAGAAATGGTTGGTGCTTTAGATATTGCTCTACGTTGCACTTCTGTGGTACCTGAAAAAAGGCCATCAATGTTAGATGTTGTTAGAGGTCTTCAGTCTCTTGAGTCAAGGACTTGTGTTGCAAATTTGCAGGGTCCAAATGATGAACCCTCCGTTCCTGTttga 2664 0.3416 MSKFCIYLFFFLSLTFSSIFKLTSSSSSEFQTLLSFKSTIQDTKNTLSTWSNTSQTHFCNWTGISCSSSSSSLSVTSVNLQSLNLSGDISSSICDLPNLFDLNLANNVFNQPIPLHLSQCSSLKSLNLSNNLIWGTIPSQISLFVSLSVLDLSRNHIEGNVPDTLGSLKNLQVLNMASNLLSGDVPKVFGNLTKLEILDFSENPYLVSEIPEDIGQLVNLKQLFLQSSSFQGEIPESLKGLISLSYLDLSENNLTGEVPKTLVSSLKNLVSFDVSLNKLKGSFPNGLCNGKVLINLSLHTNSFTGLIPNTTSECKSLERFQVQNNGFSGDFPVVLFSLPKIKLIRGENNRFTGQIPESISEAVQLEQVQLDNNLFDGKIPSGLGFVKSLYRFSASLNHFHGEIPPNFCDSPVMSIVNLSHNSLSGHIPQLKKCRKLVSLSLADNSFTGEIPSSLAELPVLTYLDLSDNNLTGSIPLGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPSLCGPGLPNSCSDDKPRHHSASGLTTLTCALISLAFVAGTALVAGGFILYRRSLKENEAVVWRSVFFYPLRITEHDLVIGMNEKSSIGNGVFGNVYVVSLPSGDLVSVKKLVKFGNQSSKSLKVEVKTLAKIRHKNIVKILGFCHSDESIFLIYEYLHGGSLGDLISSQDFQLHWGVRLRIAIRVAQGLAYLHKDYVPHLVHRNVKSKNILLDVNFEPKLAHFALDRIVGEAAFQSTLDSESASSCYIAPEYGYNKKASEQLDVYSFGVVLLELVCGRQAEQTDSSDSSLDIVKWVRRKVNITNGVHQVLDSKISQTCHQEMVGALDIALRCTSVVPEKRPSMLDVVRGLQSLESRTCVANLQGPNDEPSVPV 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03400 887 PRINTS Leucine-rich repeat signature 457 470 - -
Tsu07g03400 887 PRINTS Leucine-rich repeat signature 244 257 - -
Tsu07g03400 887 Gene3D Ribonuclease Inhibitor 264 534 IPR032675 -
Tsu07g03400 887 Gene3D Phosphorylase Kinase; domain 1 589 670 - -
Tsu07g03400 887 SUPERFAMILY L domain-like 207 524 - -
Tsu07g03400 887 ProSitePatterns Protein kinases ATP-binding region signature. 601 624 IPR017441 GO:0005524
Tsu07g03400 887 Pfam Leucine rich repeat 146 203 IPR001611 GO:0005515
Tsu07g03400 887 ProSiteProfiles Protein kinase domain profile. 595 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03400 887 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Tsu07g03400 887 Pfam Protein kinase domain 596 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03400 887 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Tsu07g03400 887 Gene3D Ribonuclease Inhibitor 206 263 IPR032675 -
Tsu07g03400 887 Gene3D Transferase(Phosphotransferase) domain 1 671 878 - -
Tsu07g03400 887 SUPERFAMILY L domain-like 26 308 - -
Tsu07g03400 887 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Tsu07g03400 887 Gene3D Ribonuclease Inhibitor 26 205 IPR032675 -
Tsu07g03400 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 875 - -
Tsu07g03400 887 SMART LRR_typ_2 144 167 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 96 120 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 168 191 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 457 480 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 241 265 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 192 217 IPR003591 -
Tsu07g03400 887 SMART LRR_typ_2 266 290 IPR003591 -
Tsu07g03400 887 PANTHER OSJNBB0022F23.6 PROTEIN 8 875 - -
Tsu07g03400 887 Pfam Leucine Rich repeat 459 472 IPR001611 GO:0005515
Tsu07g03400 887 SUPERFAMILY Protein kinase-like (PK-like) 597 863 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03400 Tsu-Chr7 40433533 40436898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03400 29 867 Receptor kinase-like Gene Family AT5G06940 62.515 0.0 1023
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu07g03400 Pkinase 8.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03400 - - gmx:100794428 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03400 07 40433533 40436898 Tsu07g03400 07 40433533 40436898 ECH