Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03398 ATGGCACGGAATAAGAAAGCTAGGGTTTCTGACGATGAAGAAATCGAAGATCAACCTCAAAAGACCCTCTACCagGTTCTTGGTTTGGAGAAAACTGCTTCTCAACAGGAAATAAAAAAGGCTTATTATAAATTGGCATTGCGGCTTCATCCGGATAAGAACCCTGGTGATGAGGAAGCTAAAGAAAAATTCCAGCAATTGCAAAAAGTTATTTCCATTCTTGGAGACGAAGAGAAACGAGCTATCTATGATGAGACTGGTTgtattgatgatgatGATCTTGCAGGAGATGTTCAGAATCTTCATGAGTTTTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGACATTGAGGAATTTGAAGCAAACTACAGGGGGTCTGACTCAGAGAAAAATGATTTGGTTGAGCTGTACAAGAAGTGCAAAGGGAATATGACCAGGCTTTTTTGTTCAATGCTTTGTTCAGATGCTAAACTTGACTCACACCGATTCAAAGATATTCTTGATGAGGCTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCAGAAATTAAACCGCCCACAAGTCCTTTAAGGAGGAGGGCAAAGTCAAATAAGCAGCCCGAAACAGATCTATATGCAGTCATAGCACAACGCCGAAACGAGAGGAAAGGCCAGTTTGATTCAATGTTTTCATCTCTAGTATCGAAGTATGGTGGAGGTGATATGCCAGAACCTTCTGAAGAGGAATTTGAAGCTGCACAGAAAAAGTTGGAGAAGGGAAGATcctcaaaaaaatcaaagcaatCAAAAGGAAAGTAA 828 0.3913 MARNKKARVSDDEEIEDQPQKTLYQVLGLEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRAIYDETGCIDDDDLAGDVQNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLVELYKKCKGNMTRLFCSMLCSDAKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSEIKPPTSPLRRRAKSNKQPETDLYAVIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEAAQKKLEKGRSSKKSKQSKGK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03398 275 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Tsu07g03398 275 SMART dnaj_3 21 79 IPR001623 -
Tsu07g03398 275 CDD DnaJ 22 76 IPR001623 -
Tsu07g03398 275 Gene3D DnaJ domain 6 100 IPR036869 -
Tsu07g03398 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 271 IPR042977 -
Tsu07g03398 275 SUPERFAMILY Chaperone J-domain 21 93 IPR036869 -
Tsu07g03398 275 MobiDBLite consensus disorder prediction 240 275 - -
Tsu07g03398 275 MobiDBLite consensus disorder prediction 194 214 - -
Tsu07g03398 275 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 271 - -
Tsu07g03398 275 PRINTS DnaJ domain signature 42 57 IPR001623 -
Tsu07g03398 275 PRINTS DnaJ domain signature 79 98 IPR001623 -
Tsu07g03398 275 PRINTS DnaJ domain signature 24 42 IPR001623 -
Tsu07g03398 275 PRINTS DnaJ domain signature 59 79 IPR001623 -
Tsu07g03398 275 MobiDBLite consensus disorder prediction 195 209 - -
Tsu07g03398 275 Pfam DnaJ domain 23 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03398 Tsu-Chr7 40410190 40412880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03398 24 84 C2H2 Transcription Factor Family AT1G74250 40.909 4.08e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03398 K09529 - gmx:100793909 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03398 07 40410190 40412880 Tsu07g03398 07 40410190 40412880 ECH
Tsu07g03398 07 40410190 40412880 Tsu01g01908 01 19187418 19191649 PCT