Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03397 ATGAATCTGATTGCAAAACTGAATAACCCTTATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCATGTATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCGGAGAGTATTAAGAAAGCTCGAGGATCATTTTTCCCGGAGGagAAGGTCTGCAAATGGCTGACTCAATTGTTGATAGCTGTAGATTACTTGCACTCTAACCGTGTAATCCACAGGGATCTTAAGTGTTCCAACATATTCCTCACCAAGGAGAACAGTATTCGGCTCGGTGATTTTGGTCTTGCAAAGCGACTAAATGGAGAAGACCTCGCTTCCTCGGTCGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCGGACATACCATATGGTTATAAATCTGATATATGGTCTCTCGGTTGCTGCATGTTTGAGATTGCTGCACATCAGTCAGCATTTCGTGCTCCGGACATGGCTGGtctaatcaataaaataaacagATCCTCCATTTCTCCACTTCCAATTGTTTACTCTCCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGGCCAACAGCTGCCGAATTGTTAAGACATCCACATTTACAACCTTATGTTATTCGCTGTCAGACCGCATCGTCTAATGTTCTTCCAATATATCCCCTAGTTAACTCAAAGGATAAAACAAAAAGATCTCCCAAATCTAGTGGCAGAGAAATGGGGTTTGTAAATCGTTTGGAACGAGTTCATCCGATTGAGGGAAATGGTGATGTACAGACAAGAAATCTTCGTAACAATGGCGAGGTAACAATCTCAACAAGCACCCAATACAACCTTGAGACCAAGATGGACGCTCTTACAAGCTACACAGTCGAATCTTCTACTAGTATTAGTGACTCAAAAGATGGTTCAACAACATCTGAATCAACTACTTGTAGTGTGTGCAAGGAGGACTATAAAATTAGACCACCAAGGGAAATGGCTAACAATGGAATCACCTCGAAGAGTATACACGATTCTCTGCATGAAGAAGAACAAAGATTTGCTGCGGCGACCACCGAAGTTGAAGATACCTTCTCGAGGGAAGGTTTTGGTAATGCCGAAGCGCAGAGGGAACATGCCAAATTTGATGACCTCAGGAAATCAACTACTTCCAGTGCCGGAAGTAGCAGCACTGACAAAAGCAATTCAATCAACGAGGAAAGTTCATCGCTAATTATGCATCCTCTCAGGGTTGAACATGACAGTACCCAGTCCGGAGACTActtgaagaaaaatgaaagccGTGATTCCCTTACAGAAGAAGGCTTGCATATAAACGGCTTGTCGTCAGAGAGTATTGATAATCATAATACTGATACACTTGCAGTTAAGGATGATAGTATAGCAAAACAACACATTATTTTCCCCACACAGAAAGATGATAATGTAACACCAAACGGCATTTCATTGAGTGTAGTTACTGCAACAGATGGTGACGGCGACGAAACAATCAAGGATGCATTGGATAGTCCATGCCAGAAAAGAGCTGATGCATTGGAATCTCTGCTTGAGTTATGTGCTCAGTTACTTAAACAAGATAAACTTGAAGAGCTTGCTGGTGTGCTAAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGTTGACAAAAAGCCTTATGTCTGCTCAAAAGTTTAACCCTGAAAACTAG 1719 0.4113 MNLIAKLNNPYIVDYKDAWVEKEDHVCIITGYCEGGDMAESIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKENSIRLGDFGLAKRLNGEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQSAFRAPDMAGLINKINRSSISPLPIVYSPTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVIRCQTASSNVLPIYPLVNSKDKTKRSPKSSGREMGFVNRLERVHPIEGNGDVQTRNLRNNGEVTISTSTQYNLETKMDALTSYTVESSTSISDSKDGSTTSESTTCSVCKEDYKIRPPREMANNGITSKSIHDSLHEEEQRFAAATTEVEDTFSREGFGNAEAQREHAKFDDLRKSTTSSAGSSSTDKSNSINEESSSLIMHPLRVEHDSTQSGDYLKKNESRDSLTEEGLHINGLSSESIDNHNTDTLAVKDDSIAKQHIIFPTQKDDNVTPNGISLSVVTATDGDGDETIKDALDSPCQKRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLMSAQKFNPEN 572
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03397 572 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 411 555 - -
Tsu07g03397 572 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 1 407 - -
Tsu07g03397 572 SUPERFAMILY Protein kinase-like (PK-like) 3 255 IPR011009 -
Tsu07g03397 572 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03397 572 MobiDBLite consensus disorder prediction 299 318 - -
Tsu07g03397 572 MobiDBLite consensus disorder prediction 419 434 - -
Tsu07g03397 572 Pfam Protein kinase domain 2 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03397 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Tsu07g03397 572 MobiDBLite consensus disorder prediction 386 409 - -
Tsu07g03397 572 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g03397 572 Gene3D Transferase(Phosphotransferase) domain 1 1 249 - -
Tsu07g03397 572 MobiDBLite consensus disorder prediction 371 385 - -
Tsu07g03397 572 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 411 555 - -
Tsu07g03397 572 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 407 - -
Tsu07g03397 572 MobiDBLite consensus disorder prediction 368 434 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu07g03397 Tsu-Chr7 40402901 40407271 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03397 1 208 MAP Kinase Kinase Kinase AT3G13530 35.407 2.41e-32 131
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu07g03397 Pkinase 2.1e-52 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03397 K08857 - gmx:100793379 808.52
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03397 07 40402901 40407271 Tsu07g03397 07 40402901 40407271 ECH
Tsu07g03397 07 40402901 40407271 Tsu01g01907 01 19168731 19176832 PCT